Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4341 and GFF4342 are separated by 81 nucleotides GFF4342 and GFF4343 are separated by 14 nucleotides GFF4343 and GFF4344 overlap by 1 nucleotides GFF4344 and GFF4345 overlap by 11 nucleotides
GFF4341 - Probable secreted protein, at 121,991 to 123,484
GFF4341
GFF4342 - Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB, at 123,566 to 124,453
GFF4342
GFF4343 - Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-), at 124,468 to 124,797
GFF4343
GFF4344 - Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-), at 124,797 to 125,411
GFF4344
GFF4345 - Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-), at 125,401 to 127,392
GFF4345
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1 at 122.837 kb on - strand, within GFF4341 at 123.391 kb on + strand at 123.463 kb on - strand at 123.577 kb on - strand at 123.607 kb on + strand at 123.652 kb on + strand at 123.686 kb on - strand, within GFF4342 at 123.823 kb on - strand, within GFF4342 at 124.078 kb on - strand, within GFF4342 at 124.078 kb on - strand, within GFF4342 at 124.086 kb on + strand, within GFF4342 at 124.194 kb on - strand, within GFF4342 at 124.289 kb on - strand, within GFF4342 at 124.289 kb on - strand, within GFF4342 at 124.334 kb on - strand, within GFF4342 at 124.336 kb on - strand, within GFF4342 at 124.488 kb on - strand at 124.488 kb on - strand at 124.503 kb on + strand, within GFF4343 at 124.504 kb on - strand, within GFF4343 at 124.650 kb on + strand, within GFF4343 at 124.732 kb on - strand, within GFF4343 at 124.785 kb on + strand at 124.799 kb on - strand at 124.830 kb on + strand at 125.075 kb on + strand, within GFF4344 at 125.118 kb on - strand, within GFF4344 at 125.144 kb on + strand, within GFF4344 at 125.272 kb on + strand, within GFF4344 at 125.273 kb on - strand, within GFF4344 at 125.277 kb on - strand, within GFF4344 at 125.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 122,837 - GFF4341 0.57 -1.1 123,391 + -0.1 123,463 - -0.2 123,577 - +0.3 123,607 + -0.1 123,652 + -0.3 123,686 - GFF4342 0.14 -0.1 123,823 - GFF4342 0.29 +0.2 124,078 - GFF4342 0.58 -0.3 124,078 - GFF4342 0.58 +1.4 124,086 + GFF4342 0.59 +0.0 124,194 - GFF4342 0.71 +0.2 124,289 - GFF4342 0.81 +0.4 124,289 - GFF4342 0.81 -0.5 124,334 - GFF4342 0.86 +0.4 124,336 - GFF4342 0.87 +0.9 124,488 - -0.2 124,488 - +0.6 124,503 + GFF4343 0.11 +0.0 124,504 - GFF4343 0.11 -0.4 124,650 + GFF4343 0.55 -0.1 124,732 - GFF4343 0.80 +0.2 124,785 + -0.3 124,799 - +0.3 124,830 + +0.3 125,075 + GFF4344 0.45 -0.2 125,118 - GFF4344 0.52 +0.1 125,144 + GFF4344 0.56 +1.1 125,272 + GFF4344 0.77 +0.3 125,273 - GFF4344 0.77 +0.1 125,277 - GFF4344 0.78 +0.0 125,431 - -0.1
Or see this region's nucleotide sequence