Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4208

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4206 and GFF4207 are separated by 289 nucleotidesGFF4207 and GFF4208 overlap by 23 nucleotidesGFF4208 and GFF4209 are separated by 5 nucleotidesGFF4209 and GFF4210 are separated by 86 nucleotides GFF4206 - putative cytoplasmic protein, at 18,225 to 19,253 GFF4206 GFF4207 - FIG01046757: hypothetical protein, at 19,543 to 19,680 GFF4207 GFF4208 - FIG01046757: hypothetical protein, at 19,658 to 19,978 GFF4208 GFF4209 - STMF1.14 protein, at 19,984 to 20,262 GFF4209 GFF4210 - DNA-directed RNA polymerase beta, at 20,349 to 24,572 GFF4210 Position (kb) 19 20Strain fitness (log2 ratio) -1 0 1at 19.214 kb on - strandat 19.864 kb on + strand, within GFF4208at 20.325 kb on - strandat 20.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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19,214 - +0.3
19,864 + GFF4208 0.64 -0.8
20,325 - -0.9
20,466 - +0.1

Or see this region's nucleotide sequence