Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3748

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3747 and GFF3748 are separated by 31 nucleotidesGFF3748 and GFF3749 are separated by 179 nucleotides GFF3747 - FIG001881: hydrolase of alkaline phosphatase superfamily, at 14,171 to 15,931 GFF3747 GFF3748 - FIG002927: hypothetical protein, at 15,963 to 16,190 GFF3748 GFF3749 - Nucleoid-associated protein NdpA, at 16,370 to 17,377 GFF3749 Position (kb) 15 16 17Strain fitness (log2 ratio) -1 0 1 2at 14.982 kb on + strand, within GFF3747at 14.983 kb on - strand, within GFF3747at 14.983 kb on - strand, within GFF3747at 15.231 kb on - strand, within GFF3747at 16.074 kb on - strand, within GFF3748at 16.170 kb on - strandat 16.226 kb on - strandat 16.229 kb on - strandat 16.509 kb on - strand, within GFF3749at 16.677 kb on + strand, within GFF3749at 16.678 kb on - strand, within GFF3749at 16.775 kb on - strand, within GFF3749

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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14,982 + GFF3747 0.46 -0.4
14,983 - GFF3747 0.46 -0.6
14,983 - GFF3747 0.46 +0.3
15,231 - GFF3747 0.60 +0.3
16,074 - GFF3748 0.49 -0.4
16,170 - -0.2
16,226 - -0.3
16,229 - -0.3
16,509 - GFF3749 0.14 +0.4
16,677 + GFF3749 0.30 +0.7
16,678 - GFF3749 0.31 +0.1
16,775 - GFF3749 0.40 +1.8

Or see this region's nucleotide sequence