Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3551

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3550 and GFF3551 are separated by 363 nucleotidesGFF3551 and GFF3552 are separated by 140 nucleotidesGFF3552 and GFF3553 are separated by 457 nucleotides GFF3550 - Putative transport system permease protein, at 303,406 to 304,641 GFF3550 GFF3551 - Putative transport system permease protein, at 305,005 to 306,216 GFF3551 GFF3552 - Putative cytoplasmic protein, at 306,357 to 306,716 GFF3552 GFF3553 - Putative membrane protein, at 307,174 to 308,292 GFF3553 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1at 304.020 kb on + strand, within GFF3550at 304.321 kb on + strand, within GFF3550at 304.324 kb on + strand, within GFF3550at 305.118 kb on + strandat 305.318 kb on + strand, within GFF3551at 305.365 kb on - strand, within GFF3551at 305.460 kb on + strand, within GFF3551at 305.576 kb on + strand, within GFF3551at 305.576 kb on + strand, within GFF3551at 305.746 kb on - strand, within GFF3551at 305.746 kb on - strand, within GFF3551at 305.871 kb on + strand, within GFF3551at 306.249 kb on - strandat 306.748 kb on + strandat 306.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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304,020 + GFF3550 0.50 +0.4
304,321 + GFF3550 0.74 -0.0
304,324 + GFF3550 0.74 -1.2
305,118 + +0.0
305,318 + GFF3551 0.26 -0.2
305,365 - GFF3551 0.30 -0.5
305,460 + GFF3551 0.38 -0.3
305,576 + GFF3551 0.47 -2.0
305,576 + GFF3551 0.47 -0.9
305,746 - GFF3551 0.61 -1.0
305,746 - GFF3551 0.61 +0.1
305,871 + GFF3551 0.71 -0.7
306,249 - -0.8
306,748 + -0.5
306,860 - -0.3

Or see this region's nucleotide sequence