Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3128

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3126 and GFF3127 are separated by 44 nucleotidesGFF3127 and GFF3128 are separated by 157 nucleotidesGFF3128 and GFF3129 are separated by 202 nucleotides GFF3126 - 2-oxoglutarate/malate translocator, at 131,534 to 133,018 GFF3126 GFF3127 - FIG01046325: hypothetical protein, at 133,063 to 133,518 GFF3127 GFF3128 - hypothetical protein, at 133,676 to 133,870 GFF3128 GFF3129 - Probable Fe-S oxidoreductase family 2, at 134,073 to 136,244 GFF3129 Position (kb) 133 134Strain fitness (log2 ratio) -1 0 1at 132.714 kb on - strand, within GFF3126at 132.869 kb on + strand, within GFF3126at 132.869 kb on + strand, within GFF3126at 132.912 kb on + strandat 132.913 kb on - strandat 132.913 kb on - strandat 133.014 kb on - strandat 133.207 kb on + strand, within GFF3127at 133.334 kb on + strand, within GFF3127at 133.548 kb on + strandat 133.617 kb on - strandat 134.411 kb on - strand, within GFF3129at 134.413 kb on + strand, within GFF3129at 134.447 kb on - strand, within GFF3129at 134.548 kb on + strand, within GFF3129at 134.843 kb on - strand, within GFF3129

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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132,714 - GFF3126 0.79 -0.6
132,869 + GFF3126 0.90 +0.7
132,869 + GFF3126 0.90 +0.2
132,912 + +0.1
132,913 - +0.1
132,913 - +0.1
133,014 - -0.5
133,207 + GFF3127 0.32 -0.3
133,334 + GFF3127 0.59 +0.0
133,548 + -0.6
133,617 - +0.5
134,411 - GFF3129 0.16 -0.0
134,413 + GFF3129 0.16 -0.8
134,447 - GFF3129 0.17 -0.2
134,548 + GFF3129 0.22 +0.2
134,843 - GFF3129 0.35 -0.3

Or see this region's nucleotide sequence