Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF27

Experiment: Br60_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF26 and GFF27 are separated by 73 nucleotidesGFF27 and GFF28 are separated by 52 nucleotidesGFF28 and GFF29 are separated by 31 nucleotides GFF26 - Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type, at 4,904 to 6,622 GFF26 GFF27 - Copper homeostasis protein CutF precursor / Lipoprotein NlpE involeved in surface adhesion, at 6,696 to 6,818 GFF27 GFF28 - Copper homeostasis protein CutF precursor / Lipoprotein NlpE involeved in surface adhesion, at 6,871 to 7,401 GFF28 GFF29 - Hypothetical protein YaeJ with similarity to translation release factor, at 7,433 to 7,855 GFF29 Position (kb) 6 7Strain fitness (log2 ratio) -2 -1 0 1at 6.663 kb on - strandat 6.804 kb on + strand, within GFF27at 6.937 kb on - strand, within GFF28at 6.937 kb on - strand, within GFF28at 6.937 kb on - strand, within GFF28at 6.937 kb on - strand, within GFF28at 6.937 kb on - strand, within GFF28at 6.940 kb on + strand, within GFF28at 6.940 kb on + strand, within GFF28at 6.941 kb on - strand, within GFF28at 6.941 kb on - strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.944 kb on + strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.945 kb on - strand, within GFF28at 6.948 kb on + strand, within GFF28at 6.948 kb on + strand, within GFF28at 6.948 kb on + strand, within GFF28at 6.949 kb on - strand, within GFF28at 7.005 kb on - strand, within GFF28at 7.008 kb on + strand, within GFF28at 7.074 kb on - strand, within GFF28at 7.140 kb on - strand, within GFF28at 7.219 kb on + strand, within GFF28at 7.339 kb on - strand, within GFF28at 7.363 kb on - strandat 7.384 kb on + strandat 7.385 kb on - strandat 7.473 kb on - strandat 7.702 kb on - strand, within GFF29at 7.762 kb on + strand, within GFF29at 7.763 kb on - strand, within GFF29

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
remove
6,663 - +0.3
6,804 + GFF27 0.88 -0.5
6,937 - GFF28 0.12 -0.9
6,937 - GFF28 0.12 -0.2
6,937 - GFF28 0.12 +0.0
6,937 - GFF28 0.12 -0.4
6,937 - GFF28 0.12 -0.7
6,940 + GFF28 0.13 +0.2
6,940 + GFF28 0.13 -0.1
6,941 - GFF28 0.13 -0.8
6,941 - GFF28 0.13 -0.2
6,944 + GFF28 0.14 -0.9
6,944 + GFF28 0.14 -0.1
6,944 + GFF28 0.14 -0.3
6,944 + GFF28 0.14 -0.3
6,944 + GFF28 0.14 -0.0
6,945 - GFF28 0.14 +0.1
6,945 - GFF28 0.14 -1.2
6,945 - GFF28 0.14 -0.4
6,945 - GFF28 0.14 -0.1
6,945 - GFF28 0.14 -0.1
6,945 - GFF28 0.14 +0.0
6,948 + GFF28 0.15 +0.0
6,948 + GFF28 0.15 -0.5
6,948 + GFF28 0.15 -0.5
6,949 - GFF28 0.15 -0.0
7,005 - GFF28 0.25 +0.1
7,008 + GFF28 0.26 -0.4
7,074 - GFF28 0.38 +0.2
7,140 - GFF28 0.51 +0.1
7,219 + GFF28 0.66 -0.6
7,339 - GFF28 0.88 -0.2
7,363 - +0.1
7,384 + -0.9
7,385 - -1.6
7,473 - -2.3
7,702 - GFF29 0.64 -0.4
7,762 + GFF29 0.78 +0.3
7,763 - GFF29 0.78 +0.2

Or see this region's nucleotide sequence