Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF252

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF251 and GFF252 are separated by 15 nucleotidesGFF252 and GFF253 are separated by 867 nucleotides GFF251 - Lysophospholipase L2 (EC 3.1.1.5), at 24,694 to 25,710 GFF251 GFF252 - Cof protein, HD superfamily hydrolase, at 25,726 to 26,526 GFF252 GFF253 - Transcriptional activator MetR, at 27,394 to 28,347 GFF253 Position (kb) 25 26 27Strain fitness (log2 ratio) -1 0 1 2at 24.892 kb on + strand, within GFF251at 24.897 kb on - strand, within GFF251at 24.942 kb on + strand, within GFF251at 25.093 kb on + strand, within GFF251at 25.093 kb on + strand, within GFF251at 25.094 kb on - strand, within GFF251at 25.095 kb on + strand, within GFF251at 25.168 kb on - strand, within GFF251at 25.345 kb on + strand, within GFF251at 25.591 kb on - strand, within GFF251at 25.603 kb on + strand, within GFF251at 25.779 kb on + strandat 25.871 kb on + strand, within GFF252at 25.872 kb on - strand, within GFF252at 25.906 kb on + strand, within GFF252at 25.906 kb on + strand, within GFF252at 25.962 kb on + strand, within GFF252at 25.962 kb on + strand, within GFF252at 26.034 kb on + strand, within GFF252at 26.035 kb on - strand, within GFF252at 26.112 kb on + strand, within GFF252at 26.353 kb on - strand, within GFF252at 26.520 kb on - strandat 26.541 kb on - strandat 26.572 kb on - strandat 26.593 kb on - strandat 26.624 kb on + strandat 26.625 kb on - strandat 26.630 kb on + strandat 26.657 kb on - strandat 26.687 kb on + strandat 26.691 kb on + strandat 26.692 kb on - strandat 26.692 kb on - strandat 26.692 kb on - strandat 26.768 kb on - strandat 26.784 kb on + strandat 26.785 kb on - strandat 26.785 kb on - strandat 26.786 kb on + strandat 26.787 kb on - strandat 26.820 kb on + strandat 26.820 kb on + strandat 26.821 kb on - strandat 26.821 kb on - strandat 26.821 kb on - strandat 26.823 kb on - strandat 26.841 kb on + strandat 26.841 kb on + strandat 26.841 kb on + strandat 26.841 kb on + strandat 26.842 kb on - strandat 26.895 kb on + strandat 26.897 kb on + strandat 26.911 kb on - strandat 26.955 kb on - strandat 27.047 kb on + strandat 27.048 kb on - strandat 27.048 kb on - strandat 27.050 kb on + strandat 27.079 kb on - strandat 27.262 kb on - strandat 27.266 kb on + strandat 27.267 kb on - strandat 27.276 kb on + strandat 27.312 kb on - strandat 27.320 kb on + strandat 27.321 kb on + strandat 27.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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24,892 + GFF251 0.19 -0.1
24,897 - GFF251 0.20 +0.4
24,942 + GFF251 0.24 +0.1
25,093 + GFF251 0.39 +0.8
25,093 + GFF251 0.39 +0.0
25,094 - GFF251 0.39 -0.2
25,095 + GFF251 0.39 -0.6
25,168 - GFF251 0.47 +0.1
25,345 + GFF251 0.64 +1.2
25,591 - GFF251 0.88 +0.1
25,603 + GFF251 0.89 +0.3
25,779 + +0.0
25,871 + GFF252 0.18 -0.2
25,872 - GFF252 0.18 -0.3
25,906 + GFF252 0.22 -0.2
25,906 + GFF252 0.22 -0.2
25,962 + GFF252 0.29 -0.3
25,962 + GFF252 0.29 -1.5
26,034 + GFF252 0.38 -0.3
26,035 - GFF252 0.39 +0.0
26,112 + GFF252 0.48 -0.0
26,353 - GFF252 0.78 -0.2
26,520 - +0.1
26,541 - -0.7
26,572 - -0.1
26,593 - -0.5
26,624 + +0.1
26,625 - -0.7
26,630 + +0.1
26,657 - +0.1
26,687 + +0.0
26,691 + +0.3
26,692 - -0.4
26,692 - -0.0
26,692 - -0.0
26,768 - +0.0
26,784 + +0.2
26,785 - -1.2
26,785 - +0.2
26,786 + -0.7
26,787 - +0.2
26,820 + +0.8
26,820 + -0.1
26,821 - -0.2
26,821 - +0.5
26,821 - +0.1
26,823 - +0.3
26,841 + +0.8
26,841 + +0.5
26,841 + -0.0
26,841 + -0.1
26,842 - +0.2
26,895 + +0.4
26,897 + -0.3
26,911 - -0.0
26,955 - +0.2
27,047 + +0.7
27,048 - -0.1
27,048 - -0.2
27,050 + +0.0
27,079 - +0.1
27,262 - -0.0
27,266 + -0.9
27,267 - +0.5
27,276 + +0.1
27,312 - +0.2
27,320 + -0.1
27,321 + +1.8
27,396 - +0.1

Or see this region's nucleotide sequence