Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2232

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2231 and GFF2232 are separated by 45 nucleotidesGFF2232 and GFF2233 are separated by 45 nucleotides GFF2231 - Glucuronide transport protein YihO, at 24,694 to 26,115 GFF2231 GFF2232 - Glucuronide transport protein YihP, homologous to YihO, at 26,161 to 27,543 GFF2232 GFF2233 - Alpha-glucosyltransferase YihQ, at 27,589 to 29,625 GFF2233 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1at 25.203 kb on - strand, within GFF2231at 25.247 kb on - strand, within GFF2231at 25.356 kb on + strand, within GFF2231at 25.439 kb on - strand, within GFF2231at 25.475 kb on + strand, within GFF2231at 25.476 kb on - strand, within GFF2231at 25.553 kb on + strand, within GFF2231at 25.553 kb on + strand, within GFF2231at 25.554 kb on - strand, within GFF2231at 25.554 kb on - strand, within GFF2231at 25.576 kb on - strand, within GFF2231at 25.603 kb on + strand, within GFF2231at 25.604 kb on - strand, within GFF2231at 25.608 kb on + strand, within GFF2231at 25.609 kb on - strand, within GFF2231at 25.630 kb on - strand, within GFF2231at 25.706 kb on + strand, within GFF2231at 25.706 kb on + strand, within GFF2231at 25.786 kb on - strand, within GFF2231at 25.786 kb on - strand, within GFF2231at 25.848 kb on + strand, within GFF2231at 25.920 kb on + strand, within GFF2231at 25.967 kb on + strand, within GFF2231at 25.967 kb on + strand, within GFF2231at 25.968 kb on - strand, within GFF2231at 26.006 kb on - strandat 26.010 kb on - strandat 26.010 kb on - strandat 26.207 kb on + strandat 26.208 kb on - strandat 26.248 kb on - strandat 26.280 kb on + strandat 26.573 kb on + strand, within GFF2232at 26.574 kb on - strand, within GFF2232at 26.574 kb on - strand, within GFF2232at 26.603 kb on - strand, within GFF2232at 26.735 kb on + strand, within GFF2232at 26.744 kb on + strand, within GFF2232at 26.747 kb on + strand, within GFF2232at 26.788 kb on - strand, within GFF2232at 26.811 kb on + strand, within GFF2232at 26.855 kb on - strand, within GFF2232at 26.855 kb on - strand, within GFF2232at 26.931 kb on + strand, within GFF2232at 26.936 kb on - strand, within GFF2232at 26.975 kb on + strand, within GFF2232at 27.030 kb on + strand, within GFF2232at 27.169 kb on - strand, within GFF2232at 27.169 kb on - strand, within GFF2232at 27.169 kb on - strand, within GFF2232at 27.228 kb on + strand, within GFF2232at 27.342 kb on + strand, within GFF2232at 27.459 kb on + strandat 27.466 kb on + strandat 27.591 kb on - strandat 27.714 kb on + strandat 27.714 kb on + strandat 27.715 kb on - strandat 27.807 kb on - strand, within GFF2233at 27.813 kb on - strand, within GFF2233at 27.824 kb on + strand, within GFF2233at 27.930 kb on + strand, within GFF2233at 27.964 kb on - strand, within GFF2233at 28.313 kb on + strand, within GFF2233at 28.314 kb on - strand, within GFF2233at 28.314 kb on - strand, within GFF2233at 28.538 kb on + strand, within GFF2233

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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25,203 - GFF2231 0.36 +0.2
25,247 - GFF2231 0.39 +0.0
25,356 + GFF2231 0.47 +0.8
25,439 - GFF2231 0.52 -0.4
25,475 + GFF2231 0.55 -0.6
25,476 - GFF2231 0.55 -0.1
25,553 + GFF2231 0.60 -0.1
25,553 + GFF2231 0.60 -0.0
25,554 - GFF2231 0.60 +0.6
25,554 - GFF2231 0.60 -0.2
25,576 - GFF2231 0.62 +0.4
25,603 + GFF2231 0.64 +0.8
25,604 - GFF2231 0.64 -0.1
25,608 + GFF2231 0.64 +0.4
25,609 - GFF2231 0.64 -0.5
25,630 - GFF2231 0.66 +0.2
25,706 + GFF2231 0.71 -1.9
25,706 + GFF2231 0.71 +0.5
25,786 - GFF2231 0.77 -0.6
25,786 - GFF2231 0.77 +0.6
25,848 + GFF2231 0.81 +0.1
25,920 + GFF2231 0.86 -0.3
25,967 + GFF2231 0.90 -0.0
25,967 + GFF2231 0.90 +0.3
25,968 - GFF2231 0.90 +0.9
26,006 - -0.3
26,010 - -0.0
26,010 - -0.3
26,207 + -0.5
26,208 - +0.6
26,248 - +0.8
26,280 + -0.6
26,573 + GFF2232 0.30 +0.1
26,574 - GFF2232 0.30 +0.5
26,574 - GFF2232 0.30 -0.1
26,603 - GFF2232 0.32 -0.8
26,735 + GFF2232 0.42 +0.2
26,744 + GFF2232 0.42 -0.2
26,747 + GFF2232 0.42 +0.1
26,788 - GFF2232 0.45 +0.0
26,811 + GFF2232 0.47 +0.6
26,855 - GFF2232 0.50 -0.3
26,855 - GFF2232 0.50 -0.1
26,931 + GFF2232 0.56 +0.2
26,936 - GFF2232 0.56 +0.5
26,975 + GFF2232 0.59 +0.7
27,030 + GFF2232 0.63 -0.0
27,169 - GFF2232 0.73 -0.1
27,169 - GFF2232 0.73 +0.6
27,169 - GFF2232 0.73 +0.0
27,228 + GFF2232 0.77 +0.4
27,342 + GFF2232 0.85 -0.1
27,459 + -0.1
27,466 + -0.4
27,591 - -0.2
27,714 + -0.1
27,714 + +0.0
27,715 - +0.1
27,807 - GFF2233 0.11 -0.1
27,813 - GFF2233 0.11 +0.1
27,824 + GFF2233 0.12 -0.1
27,930 + GFF2233 0.17 +0.1
27,964 - GFF2233 0.18 -0.7
28,313 + GFF2233 0.36 -1.0
28,314 - GFF2233 0.36 +0.0
28,314 - GFF2233 0.36 +0.2
28,538 + GFF2233 0.47 +0.0

Or see this region's nucleotide sequence