Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2203

Experiment: Br60_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2201 and GFF2202 overlap by 10 nucleotidesGFF2202 and GFF2203 are separated by 46 nucleotidesGFF2203 and GFF2204 are separated by 2 nucleotidesGFF2204 and GFF2205 are separated by 10 nucleotides GFF2201 - putative DNA-binding protein, at 1,406 to 1,726 GFF2201 GFF2202 - hypothetical protein, at 1,717 to 1,833 GFF2202 GFF2203 - Origin specific replication initiation factor #replication protein O, at 1,880 to 2,794 GFF2203 GFF2204 - DNA replication protein DnaC, at 2,797 to 3,546 GFF2204 GFF2205 - putative DNA-binding protein, at 3,557 to 3,904 GFF2205 Position (kb) 1 2 3Strain fitness (log2 ratio) -3 -2 -1 0 1at 0.958 kb on + strandat 0.958 kb on + strandat 0.959 kb on - strandat 1.385 kb on - strandat 1.397 kb on + strandat 1.398 kb on - strandat 1.462 kb on - strand, within GFF2201at 1.553 kb on - strand, within GFF2201at 1.800 kb on + strand, within GFF2202at 1.816 kb on + strand, within GFF2202at 1.839 kb on - strandat 1.911 kb on + strandat 1.911 kb on + strandat 1.998 kb on - strand, within GFF2203at 2.024 kb on - strand, within GFF2203at 2.064 kb on + strand, within GFF2203at 2.065 kb on - strand, within GFF2203at 2.073 kb on + strand, within GFF2203at 2.074 kb on - strand, within GFF2203at 2.104 kb on + strand, within GFF2203at 2.142 kb on - strand, within GFF2203at 2.145 kb on + strand, within GFF2203at 2.145 kb on + strand, within GFF2203at 2.146 kb on - strand, within GFF2203at 2.146 kb on - strand, within GFF2203at 2.147 kb on - strand, within GFF2203at 2.153 kb on - strand, within GFF2203at 2.156 kb on - strand, within GFF2203at 2.156 kb on - strand, within GFF2203at 2.242 kb on + strand, within GFF2203at 2.270 kb on + strand, within GFF2203at 2.311 kb on - strand, within GFF2203at 2.311 kb on - strand, within GFF2203at 2.314 kb on + strand, within GFF2203at 2.315 kb on - strand, within GFF2203at 2.315 kb on - strand, within GFF2203at 2.315 kb on - strand, within GFF2203at 2.371 kb on + strand, within GFF2203at 2.371 kb on + strand, within GFF2203at 2.372 kb on - strand, within GFF2203at 2.444 kb on - strand, within GFF2203at 2.444 kb on - strand, within GFF2203at 2.454 kb on + strand, within GFF2203at 2.684 kb on + strand, within GFF2203at 2.695 kb on - strand, within GFF2203at 3.006 kb on + strand, within GFF2204at 3.006 kb on + strand, within GFF2204at 3.007 kb on - strand, within GFF2204at 3.007 kb on - strand, within GFF2204at 3.012 kb on + strand, within GFF2204at 3.013 kb on - strand, within GFF2204at 3.022 kb on - strand, within GFF2204at 3.025 kb on + strand, within GFF2204at 3.203 kb on + strand, within GFF2204at 3.207 kb on + strand, within GFF2204at 3.207 kb on + strand, within GFF2204at 3.508 kb on + strandat 3.544 kb on + strandat 3.692 kb on + strand, within GFF2205at 3.692 kb on + strand, within GFF2205at 3.693 kb on - strand, within GFF2205at 3.693 kb on - strand, within GFF2205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
remove
958 + +0.6
958 + +0.9
959 - -0.1
1,385 - -1.2
1,397 + -1.9
1,398 - -0.3
1,462 - GFF2201 0.17 -0.5
1,553 - GFF2201 0.46 +0.6
1,800 + GFF2202 0.71 -0.5
1,816 + GFF2202 0.85 +0.1
1,839 - -0.5
1,911 + +0.1
1,911 + -0.6
1,998 - GFF2203 0.13 +0.0
2,024 - GFF2203 0.16 -0.7
2,064 + GFF2203 0.20 -1.3
2,065 - GFF2203 0.20 -0.5
2,073 + GFF2203 0.21 -0.4
2,074 - GFF2203 0.21 -1.0
2,104 + GFF2203 0.24 -0.4
2,142 - GFF2203 0.29 -0.3
2,145 + GFF2203 0.29 -0.5
2,145 + GFF2203 0.29 -1.0
2,146 - GFF2203 0.29 -0.8
2,146 - GFF2203 0.29 -1.2
2,147 - GFF2203 0.29 -0.9
2,153 - GFF2203 0.30 -0.1
2,156 - GFF2203 0.30 -0.9
2,156 - GFF2203 0.30 -2.8
2,242 + GFF2203 0.40 -0.2
2,270 + GFF2203 0.43 -1.7
2,311 - GFF2203 0.47 -0.7
2,311 - GFF2203 0.47 -0.7
2,314 + GFF2203 0.47 -1.9
2,315 - GFF2203 0.48 -0.2
2,315 - GFF2203 0.48 -0.7
2,315 - GFF2203 0.48 -0.8
2,371 + GFF2203 0.54 -0.6
2,371 + GFF2203 0.54 -0.8
2,372 - GFF2203 0.54 -1.1
2,444 - GFF2203 0.62 -0.1
2,444 - GFF2203 0.62 -1.0
2,454 + GFF2203 0.63 -1.0
2,684 + GFF2203 0.88 -0.1
2,695 - GFF2203 0.89 -1.2
3,006 + GFF2204 0.28 -0.1
3,006 + GFF2204 0.28 +0.3
3,007 - GFF2204 0.28 +0.0
3,007 - GFF2204 0.28 -2.2
3,012 + GFF2204 0.29 +0.1
3,013 - GFF2204 0.29 +0.7
3,022 - GFF2204 0.30 -0.4
3,025 + GFF2204 0.30 -0.1
3,203 + GFF2204 0.54 +0.1
3,207 + GFF2204 0.55 +0.3
3,207 + GFF2204 0.55 +0.5
3,508 + -0.4
3,544 + +0.3
3,692 + GFF2205 0.39 +0.4
3,692 + GFF2205 0.39 +1.0
3,693 - GFF2205 0.39 -0.7
3,693 - GFF2205 0.39 +0.5

Or see this region's nucleotide sequence