Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1510

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1509 and GFF1510 are separated by 8 nucleotidesGFF1510 and GFF1511 are separated by 216 nucleotidesGFF1511 and GFF1512 overlap by 7 nucleotides GFF1509 - FIG139928: Putative protease, at 16,403 to 17,281 GFF1509 GFF1510 - FIG139552: Putative protease, at 17,290 to 18,285 GFF1510 GFF1511 - FIG138517: Putative lipid carrier protein, at 18,502 to 19,026 GFF1511 GFF1512 - FIG002208: Acetyltransferase (EC 2.3.1.-), at 19,020 to 19,523 GFF1512 Position (kb) 17 18 19Strain fitness (log2 ratio) -2 -1 0 1at 16.303 kb on - strandat 16.370 kb on + strandat 16.385 kb on - strandat 16.385 kb on - strandat 16.599 kb on + strand, within GFF1509at 16.599 kb on + strand, within GFF1509at 16.690 kb on + strand, within GFF1509at 16.690 kb on + strand, within GFF1509at 16.873 kb on + strand, within GFF1509at 16.884 kb on - strand, within GFF1509at 17.032 kb on - strand, within GFF1509at 17.048 kb on + strand, within GFF1509at 17.253 kb on + strandat 17.253 kb on + strandat 17.275 kb on - strandat 17.275 kb on - strandat 17.302 kb on - strandat 17.309 kb on + strandat 17.579 kb on + strand, within GFF1510at 17.580 kb on - strand, within GFF1510at 17.775 kb on + strand, within GFF1510at 17.831 kb on - strand, within GFF1510at 17.869 kb on + strand, within GFF1510at 18.344 kb on + strandat 18.344 kb on + strandat 18.387 kb on + strandat 18.527 kb on + strandat 18.527 kb on + strandat 18.880 kb on + strand, within GFF1511at 18.880 kb on + strand, within GFF1511at 18.881 kb on - strand, within GFF1511at 19.024 kb on + strandat 19.024 kb on + strandat 19.058 kb on + strandat 19.225 kb on + strand, within GFF1512

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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16,303 - +0.1
16,370 + -0.1
16,385 - +0.5
16,385 - +0.0
16,599 + GFF1509 0.22 -2.0
16,599 + GFF1509 0.22 +0.0
16,690 + GFF1509 0.33 +0.3
16,690 + GFF1509 0.33 -0.5
16,873 + GFF1509 0.53 -0.4
16,884 - GFF1509 0.55 +0.4
17,032 - GFF1509 0.72 -0.1
17,048 + GFF1509 0.73 +0.6
17,253 + +0.1
17,253 + +1.1
17,275 - -0.2
17,275 - +0.6
17,302 - +0.1
17,309 + -1.4
17,579 + GFF1510 0.29 -0.1
17,580 - GFF1510 0.29 -0.6
17,775 + GFF1510 0.49 -1.2
17,831 - GFF1510 0.54 -1.6
17,869 + GFF1510 0.58 +0.1
18,344 + -0.4
18,344 + +0.1
18,387 + -1.3
18,527 + +0.1
18,527 + -0.6
18,880 + GFF1511 0.72 -0.3
18,880 + GFF1511 0.72 -0.0
18,881 - GFF1511 0.72 +0.5
19,024 + +0.4
19,024 + +0.9
19,058 + +0.2
19,225 + GFF1512 0.41 +0.1

Or see this region's nucleotide sequence