Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3256 and Atu3257 are separated by 16 nucleotides Atu3257 and Atu3258 are separated by 27 nucleotides Atu3258 and Atu3259 are separated by 174 nucleotides
Atu3256: Atu3256 - zinc-binding dehydrogenase, at 272,922 to 273,968
Atu3256
Atu3257: Atu3257 - mannonate dehydratase, at 273,985 to 275,193
Atu3257
Atu3258: Atu3258 - hypothetical protein, at 275,221 to 275,643
Atu3258
Atu3259: Atu3259 - dehydrogenase, at 275,818 to 277,329
Atu3259
Position (kb) 273
274
275
276 Strain fitness (log2 ratio) -1
0
1
2 at 273.109 kb on + strand, within Atu3256 at 273.263 kb on + strand, within Atu3256 at 273.409 kb on + strand, within Atu3256 at 273.515 kb on - strand, within Atu3256 at 273.685 kb on - strand, within Atu3256 at 273.827 kb on - strand, within Atu3256 at 273.914 kb on + strand at 273.914 kb on + strand at 273.922 kb on - strand at 273.952 kb on + strand at 274.004 kb on + strand at 274.151 kb on - strand, within Atu3257 at 274.238 kb on + strand, within Atu3257 at 274.303 kb on + strand, within Atu3257 at 274.532 kb on + strand, within Atu3257 at 274.542 kb on + strand, within Atu3257 at 274.552 kb on - strand, within Atu3257 at 274.552 kb on - strand, within Atu3257 at 274.552 kb on - strand, within Atu3257 at 274.753 kb on + strand, within Atu3257 at 274.756 kb on - strand, within Atu3257 at 274.764 kb on + strand, within Atu3257 at 274.884 kb on - strand, within Atu3257 at 274.990 kb on - strand, within Atu3257 at 274.990 kb on - strand, within Atu3257 at 275.037 kb on - strand, within Atu3257 at 275.086 kb on + strand at 275.111 kb on + strand at 275.182 kb on + strand at 275.252 kb on + strand at 275.316 kb on + strand, within Atu3258 at 275.319 kb on - strand, within Atu3258 at 275.487 kb on + strand, within Atu3258 at 275.487 kb on + strand, within Atu3258 at 275.577 kb on + strand, within Atu3258 at 275.694 kb on + strand at 275.694 kb on + strand at 275.694 kb on + strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.702 kb on - strand at 275.729 kb on - strand at 275.996 kb on + strand, within Atu3259 at 276.105 kb on + strand, within Atu3259 at 276.145 kb on - strand, within Atu3259
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 273,109 + Atu3256 0.18 +0.2 273,263 + Atu3256 0.33 -0.2 273,409 + Atu3256 0.47 +0.7 273,515 - Atu3256 0.57 +0.6 273,685 - Atu3256 0.73 -1.1 273,827 - Atu3256 0.86 +1.1 273,914 + +0.2 273,914 + -0.3 273,922 - +0.3 273,952 + -0.8 274,004 + -0.5 274,151 - Atu3257 0.14 -1.1 274,238 + Atu3257 0.21 +2.1 274,303 + Atu3257 0.26 +1.0 274,532 + Atu3257 0.45 +0.5 274,542 + Atu3257 0.46 -0.1 274,552 - Atu3257 0.47 -0.4 274,552 - Atu3257 0.47 -0.3 274,552 - Atu3257 0.47 +0.3 274,753 + Atu3257 0.64 +0.0 274,756 - Atu3257 0.64 +0.5 274,764 + Atu3257 0.64 +1.2 274,884 - Atu3257 0.74 +0.1 274,990 - Atu3257 0.83 -0.8 274,990 - Atu3257 0.83 +0.6 275,037 - Atu3257 0.87 +0.7 275,086 + -0.4 275,111 + +0.8 275,182 + -0.5 275,252 + -0.4 275,316 + Atu3258 0.22 +0.1 275,319 - Atu3258 0.23 +0.3 275,487 + Atu3258 0.63 +0.4 275,487 + Atu3258 0.63 +0.6 275,577 + Atu3258 0.84 +0.2 275,694 + -0.1 275,694 + +0.7 275,694 + +0.9 275,702 - +0.6 275,702 - -1.3 275,702 - -0.3 275,729 - +0.9 275,996 + Atu3259 0.12 +0.1 276,105 + Atu3259 0.19 -0.1 276,145 - Atu3259 0.22 +0.2
Or see this region's nucleotide sequence