Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0660 and Atu0661 overlap by 4 nucleotides Atu0661 and Atu0662 are separated by 112 nucleotides
Atu0660: Atu0660 - hydrolase, at 654,495 to 655,241
Atu0660
Atu0661: Atu0661 - glycosyltransferase, at 655,238 to 656,575
Atu0661
Atu0662: Atu0662 - transcriptional regulator, GntR family, at 656,688 to 657,461
Atu0662
Position (kb) 655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 654.315 kb on - strand at 654.328 kb on - strand at 654.330 kb on - strand at 654.339 kb on - strand at 654.422 kb on - strand at 654.450 kb on - strand at 654.504 kb on + strand at 654.504 kb on + strand at 654.506 kb on + strand at 654.524 kb on - strand at 654.598 kb on + strand, within Atu0660 at 654.606 kb on - strand, within Atu0660 at 654.660 kb on + strand, within Atu0660 at 654.930 kb on + strand, within Atu0660 at 654.930 kb on + strand, within Atu0660 at 654.946 kb on + strand, within Atu0660 at 654.977 kb on + strand, within Atu0660 at 654.980 kb on + strand, within Atu0660 at 654.988 kb on - strand, within Atu0660 at 654.988 kb on - strand, within Atu0660 at 654.989 kb on - strand, within Atu0660 at 655.034 kb on - strand, within Atu0660 at 655.104 kb on - strand, within Atu0660 at 655.113 kb on + strand, within Atu0660 at 655.127 kb on - strand, within Atu0660 at 655.349 kb on - strand at 655.397 kb on - strand, within Atu0661 at 655.399 kb on + strand, within Atu0661 at 655.407 kb on - strand, within Atu0661 at 655.602 kb on - strand, within Atu0661 at 655.642 kb on - strand, within Atu0661 at 655.791 kb on - strand, within Atu0661 at 655.806 kb on + strand, within Atu0661 at 655.813 kb on - strand, within Atu0661 at 655.814 kb on - strand, within Atu0661 at 655.841 kb on + strand, within Atu0661 at 655.847 kb on + strand, within Atu0661 at 655.953 kb on - strand, within Atu0661 at 656.059 kb on + strand, within Atu0661 at 656.084 kb on - strand, within Atu0661 at 656.175 kb on + strand, within Atu0661 at 656.208 kb on + strand, within Atu0661 at 656.232 kb on + strand, within Atu0661 at 656.357 kb on - strand, within Atu0661 at 656.396 kb on - strand, within Atu0661 at 656.426 kb on - strand, within Atu0661 at 656.426 kb on - strand, within Atu0661 at 656.426 kb on - strand, within Atu0661 at 656.501 kb on + strand at 656.577 kb on + strand at 656.739 kb on + strand at 657.004 kb on - strand, within Atu0662 at 657.012 kb on + strand, within Atu0662 at 657.012 kb on + strand, within Atu0662 at 657.044 kb on - strand, within Atu0662 at 657.092 kb on - strand, within Atu0662 at 657.266 kb on - strand, within Atu0662 at 657.285 kb on + strand, within Atu0662 at 657.325 kb on - strand, within Atu0662 at 657.335 kb on + strand, within Atu0662 at 657.429 kb on - strand at 657.469 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 654,315 - +0.7 654,328 - +1.3 654,330 - +0.1 654,339 - -0.8 654,422 - -0.1 654,450 - +2.0 654,504 + +0.9 654,504 + -1.0 654,506 + -1.8 654,524 - -1.7 654,598 + Atu0660 0.14 -2.8 654,606 - Atu0660 0.15 -0.8 654,660 + Atu0660 0.22 -1.4 654,930 + Atu0660 0.58 -1.7 654,930 + Atu0660 0.58 -1.3 654,946 + Atu0660 0.60 -0.0 654,977 + Atu0660 0.65 -2.2 654,980 + Atu0660 0.65 -1.2 654,988 - Atu0660 0.66 -1.6 654,988 - Atu0660 0.66 -0.9 654,989 - Atu0660 0.66 -0.4 655,034 - Atu0660 0.72 -1.4 655,104 - Atu0660 0.82 -0.0 655,113 + Atu0660 0.83 -1.0 655,127 - Atu0660 0.85 +0.5 655,349 - -0.2 655,397 - Atu0661 0.12 -1.5 655,399 + Atu0661 0.12 -2.4 655,407 - Atu0661 0.13 -1.9 655,602 - Atu0661 0.27 -1.6 655,642 - Atu0661 0.30 -1.4 655,791 - Atu0661 0.41 -0.5 655,806 + Atu0661 0.42 -1.4 655,813 - Atu0661 0.43 -1.7 655,814 - Atu0661 0.43 -1.5 655,841 + Atu0661 0.45 -0.7 655,847 + Atu0661 0.46 -2.1 655,953 - Atu0661 0.53 -0.6 656,059 + Atu0661 0.61 -0.7 656,084 - Atu0661 0.63 -0.8 656,175 + Atu0661 0.70 -1.6 656,208 + Atu0661 0.72 -0.8 656,232 + Atu0661 0.74 -1.1 656,357 - Atu0661 0.84 -1.6 656,396 - Atu0661 0.87 -1.0 656,426 - Atu0661 0.89 -0.9 656,426 - Atu0661 0.89 -0.8 656,426 - Atu0661 0.89 -0.1 656,501 + -0.8 656,577 + -1.1 656,739 + +0.2 657,004 - Atu0662 0.41 +0.3 657,012 + Atu0662 0.42 +0.8 657,012 + Atu0662 0.42 -0.2 657,044 - Atu0662 0.46 -1.7 657,092 - Atu0662 0.52 -0.5 657,266 - Atu0662 0.75 -0.5 657,285 + Atu0662 0.77 -0.2 657,325 - Atu0662 0.82 +0.7 657,335 + Atu0662 0.84 +0.1 657,429 - -1.1 657,469 - -0.8
Or see this region's nucleotide sequence