Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0062 and Atu0063 are separated by 264 nucleotides Atu0063 and Atu0064 are separated by 224 nucleotides
Atu0062: Atu0062 - transcriptional regulator, ROK family, at 65,054 to 66,286
Atu0062
Atu0063: Atu0063 - ABC transporter, substrate binding protein (sugar), at 66,551 to 67,573
Atu0063
Atu0064: Atu0064 - ABC transporter, membrane spanning protein (sugar), at 67,798 to 68,880
Atu0064
Position (kb) 66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 65.609 kb on + strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.850 kb on + strand, within Atu0062 at 65.898 kb on + strand, within Atu0062 at 65.914 kb on + strand, within Atu0062 at 66.011 kb on - strand, within Atu0062 at 66.295 kb on + strand at 66.319 kb on + strand at 66.479 kb on - strand at 66.515 kb on + strand at 66.550 kb on + strand at 66.588 kb on + strand at 66.802 kb on + strand, within Atu0063 at 66.812 kb on + strand, within Atu0063 at 66.812 kb on + strand, within Atu0063 at 66.902 kb on + strand, within Atu0063 at 67.011 kb on - strand, within Atu0063 at 67.159 kb on - strand, within Atu0063 at 67.287 kb on - strand, within Atu0063 at 67.351 kb on - strand, within Atu0063 at 67.501 kb on + strand at 67.507 kb on + strand at 67.558 kb on - strand at 67.866 kb on - strand at 67.929 kb on + strand, within Atu0064 at 68.128 kb on + strand, within Atu0064 at 68.136 kb on - strand, within Atu0064 at 68.144 kb on + strand, within Atu0064 at 68.410 kb on + strand, within Atu0064 at 68.413 kb on + strand, within Atu0064 at 68.413 kb on + strand, within Atu0064 at 68.421 kb on - strand, within Atu0064 at 68.470 kb on - strand, within Atu0064 at 68.470 kb on - strand, within Atu0064 at 68.470 kb on - strand, within Atu0064 at 68.570 kb on + strand, within Atu0064
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 65,609 + Atu0062 0.45 -2.7 65,609 + Atu0062 0.45 -1.6 65,609 + Atu0062 0.45 -2.5 65,609 + Atu0062 0.45 -1.9 65,617 - Atu0062 0.46 -1.2 65,617 - Atu0062 0.46 -2.9 65,617 - Atu0062 0.46 -0.0 65,617 - Atu0062 0.46 -1.7 65,617 - Atu0062 0.46 -0.4 65,850 + Atu0062 0.65 -2.6 65,898 + Atu0062 0.68 -0.8 65,914 + Atu0062 0.70 -2.3 66,011 - Atu0062 0.78 -2.2 66,295 + -0.0 66,319 + -0.6 66,479 - -0.2 66,515 + +0.1 66,550 + +0.1 66,588 + +0.2 66,802 + Atu0063 0.25 +1.1 66,812 + Atu0063 0.26 -0.2 66,812 + Atu0063 0.26 +0.6 66,902 + Atu0063 0.34 +0.3 67,011 - Atu0063 0.45 -0.1 67,159 - Atu0063 0.59 -0.4 67,287 - Atu0063 0.72 +2.1 67,351 - Atu0063 0.78 +0.2 67,501 + +0.5 67,507 + -0.1 67,558 - +1.4 67,866 - -0.2 67,929 + Atu0064 0.12 -0.3 68,128 + Atu0064 0.30 +0.4 68,136 - Atu0064 0.31 -0.9 68,144 + Atu0064 0.32 +0.1 68,410 + Atu0064 0.57 +0.2 68,413 + Atu0064 0.57 -0.8 68,413 + Atu0064 0.57 -0.1 68,421 - Atu0064 0.58 -0.8 68,470 - Atu0064 0.62 -0.9 68,470 - Atu0064 0.62 -0.2 68,470 - Atu0064 0.62 -0.2 68,570 + Atu0064 0.71 -0.8
Or see this region's nucleotide sequence