Strain Fitness in Escherichia coli BW25113 around b4241
Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,463,356 | + | treB | b4240 | 0.40 | -1.1 |
4,463,360 | - | treB | b4240 | 0.41 | +0.3 |
4,463,364 | - | treB | b4240 | 0.41 | +0.1 |
4,463,373 | - | treB | b4240 | 0.42 | -0.3 |
4,463,373 | - | treB | b4240 | 0.42 | +0.7 |
4,463,382 | + | treB | b4240 | 0.42 | +0.3 |
4,463,412 | + | treB | b4240 | 0.44 | -0.4 |
4,463,426 | + | treB | b4240 | 0.45 | -0.1 |
4,463,431 | - | treB | b4240 | 0.46 | -0.7 |
4,463,509 | + | treB | b4240 | 0.51 | +0.8 |
4,463,519 | + | treB | b4240 | 0.52 | -0.4 |
4,463,561 | - | +0.8 | |||
4,463,585 | + | treB | b4240 | 0.56 | -0.2 |
4,463,585 | + | treB | b4240 | 0.56 | -0.3 |
4,463,640 | - | treB | b4240 | 0.60 | -0.7 |
4,463,640 | - | treB | b4240 | 0.60 | -0.3 |
4,463,757 | + | treB | b4240 | 0.69 | -0.4 |
4,463,769 | + | treB | b4240 | 0.69 | -0.3 |
4,463,779 | - | treB | b4240 | 0.70 | -0.0 |
4,463,854 | + | treB | b4240 | 0.75 | -0.3 |
4,463,857 | + | treB | b4240 | 0.76 | +1.1 |
4,463,910 | - | treB | b4240 | 0.79 | -0.7 |
4,463,969 | + | treB | b4240 | 0.83 | -0.2 |
4,463,969 | + | treB | b4240 | 0.83 | -0.7 |
4,463,982 | - | treB | b4240 | 0.84 | +0.9 |
4,463,982 | - | treB | b4240 | 0.84 | -0.4 |
4,463,984 | - | treB | b4240 | 0.85 | -0.9 |
4,463,987 | - | treB | b4240 | 0.85 | +0.0 |
4,463,991 | - | treB | b4240 | 0.85 | +0.4 |
4,464,051 | - | treB | b4240 | 0.89 | -0.1 |
4,464,051 | - | treB | b4240 | 0.89 | -0.4 |
4,464,071 | + | +0.3 | |||
4,464,090 | + | -0.6 | |||
4,464,090 | + | -1.0 | |||
4,464,208 | - | +0.2 | |||
4,464,208 | - | -0.9 | |||
4,464,246 | - | -0.3 | |||
4,464,285 | - | -0.1 | |||
4,464,333 | - | +0.4 | |||
4,464,345 | - | +0.1 | |||
4,464,364 | + | -0.2 | |||
4,464,364 | + | +0.4 | |||
4,464,416 | + | +0.1 | |||
4,464,421 | + | treR | b4241 | 0.10 | +0.3 |
4,464,476 | - | treR | b4241 | 0.16 | -0.0 |
4,464,545 | - | treR | b4241 | 0.24 | -0.9 |
4,464,556 | + | +0.6 | |||
4,464,609 | - | treR | b4241 | 0.30 | +0.2 |
4,464,650 | + | treR | b4241 | 0.35 | -0.4 |
4,464,651 | + | treR | b4241 | 0.35 | -0.1 |
4,464,662 | + | treR | b4241 | 0.36 | +0.3 |
4,464,662 | + | treR | b4241 | 0.36 | -0.3 |
4,464,667 | - | treR | b4241 | 0.36 | +0.0 |
4,464,713 | - | treR | b4241 | 0.41 | +0.1 |
4,464,713 | - | treR | b4241 | 0.41 | -0.3 |
4,464,748 | + | treR | b4241 | 0.45 | +0.2 |
4,464,748 | + | +2.3 | |||
4,464,754 | + | treR | b4241 | 0.46 | -0.8 |
4,464,754 | + | treR | b4241 | 0.46 | +0.4 |
4,464,762 | + | treR | b4241 | 0.46 | -0.6 |
4,464,762 | + | treR | b4241 | 0.46 | -0.6 |
4,464,782 | - | treR | b4241 | 0.49 | -0.3 |
4,464,794 | - | treR | b4241 | 0.50 | +2.2 |
4,464,795 | - | treR | b4241 | 0.50 | -0.4 |
4,464,795 | - | treR | b4241 | 0.50 | -0.7 |
4,464,796 | + | treR | b4241 | 0.50 | -0.3 |
4,464,816 | + | treR | b4241 | 0.52 | -0.3 |
4,464,816 | + | treR | b4241 | 0.52 | -0.3 |
4,464,845 | + | treR | b4241 | 0.55 | -0.2 |
4,464,851 | + | treR | b4241 | 0.56 | +0.0 |
4,464,851 | + | treR | b4241 | 0.56 | -0.6 |
4,464,853 | + | treR | b4241 | 0.56 | -0.9 |
4,464,885 | - | treR | b4241 | 0.59 | -0.1 |
4,464,898 | - | treR | b4241 | 0.61 | -0.0 |
4,464,898 | - | treR | b4241 | 0.61 | -0.6 |
4,464,900 | + | treR | b4241 | 0.61 | -0.4 |
4,464,900 | + | treR | b4241 | 0.61 | +0.2 |
4,464,900 | + | treR | b4241 | 0.61 | +0.3 |
4,464,908 | - | treR | b4241 | 0.62 | -0.3 |
4,464,908 | - | treR | b4241 | 0.62 | +1.6 |
4,464,908 | - | treR | b4241 | 0.62 | -0.7 |
4,464,988 | + | treR | b4241 | 0.70 | +1.0 |
4,464,988 | + | treR | b4241 | 0.70 | -0.9 |
4,464,995 | - | treR | b4241 | 0.71 | +0.0 |
4,464,995 | - | treR | b4241 | 0.71 | +0.3 |
4,464,996 | - | treR | b4241 | 0.71 | -0.2 |
4,464,996 | - | treR | b4241 | 0.71 | -1.2 |
4,465,015 | + | treR | b4241 | 0.73 | -0.5 |
4,465,016 | - | treR | b4241 | 0.73 | -0.7 |
4,465,018 | - | treR | b4241 | 0.73 | +0.0 |
4,465,058 | - | treR | b4241 | 0.78 | +0.3 |
4,465,060 | + | treR | b4241 | 0.78 | +0.2 |
4,465,080 | + | treR | b4241 | 0.80 | +0.7 |
4,465,088 | - | treR | b4241 | 0.81 | -0.5 |
4,465,105 | - | treR | b4241 | 0.83 | -0.3 |
4,465,120 | - | treR | b4241 | 0.84 | +0.0 |
4,465,120 | - | treR | b4241 | 0.84 | +0.6 |
4,465,166 | - | treR | b4241 | 0.89 | +0.1 |
4,465,166 | - | treR | b4241 | 0.89 | -1.1 |
4,465,183 | + | -1.5 | |||
4,465,183 | + | +0.2 | |||
4,465,192 | + | -1.7 | |||
4,465,192 | + | -0.1 | |||
4,465,200 | - | +0.1 | |||
4,465,200 | - | -0.9 | |||
4,465,209 | + | -0.0 | |||
4,465,217 | - | +0.1 | |||
4,465,226 | + | -0.7 | |||
4,465,226 | - | +0.6 | |||
4,465,228 | + | -0.5 | |||
4,465,236 | - | -0.6 | |||
4,465,236 | - | -1.0 | |||
4,465,236 | - | -0.0 | |||
4,465,236 | - | +0.6 | |||
4,465,276 | + | -0.4 | |||
4,465,276 | - | +0.6 | |||
4,465,276 | - | +1.7 | |||
4,465,286 | + | +0.7 | |||
4,465,299 | - | +0.0 | |||
4,465,305 | + | +0.2 | |||
4,465,305 | + | +0.0 | |||
4,465,309 | + | +1.0 | |||
4,465,313 | + | +0.5 | |||
4,465,313 | + | -0.4 | |||
4,465,316 | + | +0.3 | |||
4,465,317 | - | +1.8 | |||
4,465,317 | - | +1.7 | |||
4,465,326 | + | -0.4 | |||
4,465,326 | + | +0.4 | |||
4,465,331 | + | -0.0 | |||
4,465,331 | + | -0.1 | |||
4,465,333 | + | +0.3 | |||
4,465,339 | + | +0.4 | |||
4,465,339 | + | -0.3 | |||
4,465,371 | + | -0.1 | |||
4,465,372 | + | -0.2 | |||
4,465,377 | + | -0.2 | |||
4,465,379 | - | +0.6 | |||
4,465,379 | - | -0.0 | |||
4,465,379 | - | +0.0 | |||
4,465,383 | + | +1.6 | |||
4,465,432 | + | -0.1 | |||
4,465,432 | + | +0.8 | |||
4,465,449 | + | +0.4 | |||
4,465,449 | + | -0.4 | |||
4,465,452 | + | -1.1 | |||
4,465,452 | + | -0.3 | |||
4,465,452 | + | +0.7 | |||
4,465,453 | + | +0.5 | |||
4,465,453 | + | +0.3 | |||
4,465,456 | - | +0.1 | |||
4,465,457 | - | +0.3 | |||
4,465,457 | - | -0.4 | |||
4,465,467 | - | mgtL | b4702 | 0.24 | +0.1 |
4,465,467 | - | mgtL | b4702 | 0.24 | +1.0 |
4,465,480 | - | mgtL | b4702 | 0.48 | -0.5 |
4,465,480 | - | mgtL | b4702 | 0.48 | -0.4 |
4,465,486 | - | mgtL | b4702 | 0.59 | +0.2 |
4,465,486 | - | mgtL | b4702 | 0.59 | -2.4 |
4,465,523 | + | +0.5 | |||
4,465,525 | + | +0.4 | |||
4,465,525 | + | -0.1 | |||
4,465,525 | + | +1.2 | |||
4,465,531 | + | +0.1 | |||
4,465,531 | + | -0.8 | |||
4,465,533 | + | -0.3 | |||
4,465,543 | - | +0.9 | |||
4,465,543 | - | -0.8 | |||
4,465,543 | - | -0.3 | |||
4,465,543 | - | -0.7 | |||
4,465,543 | - | +1.1 | |||
4,465,567 | - | +0.1 | |||
4,465,567 | - | -1.3 | |||
4,465,579 | - | +0.5 | |||
4,465,619 | - | +0.2 | |||
4,465,621 | + | +0.6 | |||
4,465,621 | + | -0.1 | |||
4,465,621 | + | +0.6 | |||
4,465,629 | - | -0.3 | |||
4,465,629 | - | -1.3 | |||
4,465,631 | + | +0.0 | |||
4,465,631 | + | -0.3 | |||
4,465,631 | + | +0.2 | |||
4,465,631 | + | -0.6 | |||
4,465,631 | + | +0.3 | |||
4,465,642 | + | +0.5 | |||
4,465,644 | - | +0.1 | |||
4,465,652 | - | +0.8 | |||
4,465,652 | - | -1.3 | |||
4,465,694 | + | +0.0 | |||
4,465,694 | + | +0.9 | |||
4,465,706 | - | -0.3 | |||
4,465,706 | - | +0.1 | |||
4,465,707 | - | -0.8 | |||
4,465,728 | + | -0.6 | |||
4,465,743 | - | -0.8 | |||
4,465,745 | - | -0.6 | |||
4,465,745 | - | +0.6 | |||
4,465,755 | + | -0.5 | |||
4,465,762 | + | -0.6 | |||
4,465,763 | - | -1.2 | |||
4,465,763 | - | -0.3 | |||
4,465,763 | - | +0.8 | |||
4,465,796 | + | +1.7 | |||
4,465,814 | + | -1.5 | |||
4,465,816 | + | -0.0 | |||
4,465,816 | + | -0.5 | |||
4,465,832 | - | +0.2 | |||
4,465,834 | - | +0.2 | |||
4,465,835 | + | -0.2 | |||
4,465,842 | - | -0.3 | |||
4,465,859 | - | +0.3 | |||
4,465,859 | - | +0.1 | |||
4,465,859 | - | -0.4 | |||
4,465,859 | - | +0.7 | |||
4,465,859 | - | +0.3 | |||
4,465,863 | - | -0.9 | |||
4,465,905 | - | +0.5 | |||
4,465,911 | + | +0.2 | |||
4,465,919 | - | mgtA | b4242 | 0.10 | +0.1 |
4,465,921 | + | mgtA | b4242 | 0.10 | +0.2 |
4,465,921 | + | mgtA | b4242 | 0.10 | -0.5 |
4,465,921 | + | mgtA | b4242 | 0.10 | +0.1 |
4,465,922 | + | mgtA | b4242 | 0.10 | -0.1 |
4,465,922 | + | mgtA | b4242 | 0.10 | +1.0 |
4,465,922 | + | mgtA | b4242 | 0.10 | -0.4 |
4,465,930 | - | mgtA | b4242 | 0.10 | +0.0 |
4,465,932 | + | mgtA | b4242 | 0.11 | +0.3 |
4,465,932 | + | mgtA | b4242 | 0.11 | +0.4 |
4,465,934 | + | mgtA | b4242 | 0.11 | -0.4 |
4,465,942 | - | mgtA | b4242 | 0.11 | +0.4 |
4,465,942 | - | mgtA | b4242 | 0.11 | +0.1 |
4,465,969 | - | mgtA | b4242 | 0.12 | -1.3 |
4,465,986 | - | mgtA | b4242 | 0.13 | +0.3 |
4,465,986 | - | mgtA | b4242 | 0.13 | +0.0 |
4,466,033 | + | mgtA | b4242 | 0.14 | +0.1 |
4,466,036 | + | mgtA | b4242 | 0.14 | +1.0 |
4,466,042 | - | mgtA | b4242 | 0.15 | +0.1 |
4,466,042 | - | mgtA | b4242 | 0.15 | +0.3 |
4,466,067 | + | mgtA | b4242 | 0.16 | +0.1 |
4,466,067 | - | mgtA | b4242 | 0.16 | +0.5 |
4,466,067 | - | mgtA | b4242 | 0.16 | +0.2 |
4,466,068 | + | mgtA | b4242 | 0.16 | -0.3 |
4,466,072 | + | mgtA | b4242 | 0.16 | +0.4 |
4,466,072 | + | mgtA | b4242 | 0.16 | +0.1 |
4,466,076 | - | mgtA | b4242 | 0.16 | +0.6 |
4,466,076 | - | mgtA | b4242 | 0.16 | +0.1 |
4,466,078 | - | mgtA | b4242 | 0.16 | -0.0 |
4,466,080 | - | mgtA | b4242 | 0.16 | -0.5 |
4,466,085 | - | mgtA | b4242 | 0.16 | -0.0 |
4,466,090 | + | mgtA | b4242 | 0.16 | -0.1 |
4,466,092 | - | mgtA | b4242 | 0.16 | -0.4 |
4,466,092 | - | mgtA | b4242 | 0.16 | -0.5 |
4,466,097 | - | mgtA | b4242 | 0.17 | +0.4 |
4,466,103 | + | mgtA | b4242 | 0.17 | -0.4 |
4,466,114 | + | mgtA | b4242 | 0.17 | -0.7 |
4,466,114 | + | mgtA | b4242 | 0.17 | +0.1 |
4,466,114 | - | mgtA | b4242 | 0.17 | +0.2 |
4,466,127 | + | mgtA | b4242 | 0.18 | +1.6 |
4,466,252 | + | mgtA | b4242 | 0.22 | +0.1 |
4,466,262 | + | mgtA | b4242 | 0.23 | +0.2 |
4,466,262 | + | mgtA | b4242 | 0.23 | -1.0 |
4,466,262 | + | mgtA | b4242 | 0.23 | +0.1 |
Or see this region's nucleotide sequence