Strain Fitness in Escherichia coli BW25113 around b4104
Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,319,573 | + | phnG | b4101 | 0.68 | -0.2 |
4,319,731 | - | +12.8 | |||
4,319,731 | - | +11.4 | |||
4,319,803 | + | phnF | b4102 | 0.11 | -0.4 |
4,319,803 | + | phnF | b4102 | 0.11 | +1.7 |
4,319,803 | + | phnF | b4102 | 0.11 | -0.2 |
4,319,811 | - | phnF | b4102 | 0.13 | +12.3 |
4,319,811 | - | phnF | b4102 | 0.13 | +11.0 |
4,319,985 | - | phnF | b4102 | 0.37 | +11.7 |
4,319,999 | + | phnF | b4102 | 0.38 | +1.4 |
4,320,073 | - | phnF | b4102 | 0.49 | +12.1 |
4,320,121 | - | phnF | b4102 | 0.55 | +12.1 |
4,320,253 | - | phnF | b4102 | 0.73 | +12.4 |
4,320,253 | - | phnF | b4102 | 0.73 | +12.2 |
4,320,292 | + | phnF | b4102 | 0.79 | -0.4 |
4,320,326 | + | phnF | b4102 | 0.83 | -0.0 |
4,320,348 | - | phnF | b4102 | 0.87 | +11.3 |
4,320,405 | - | +1.9 | |||
4,320,412 | + | +0.3 | |||
4,320,412 | + | -0.2 | |||
4,320,652 | - | phnE | b4104 | 0.50 | +11.8 |
4,320,670 | - | phnE | b4104 | 0.55 | +12.0 |
4,320,678 | - | phnE | b4104 | 0.57 | +12.3 |
4,320,691 | + | phnE | b4104 | 0.60 | -0.1 |
4,320,804 | + | -1.0 | |||
4,320,842 | + | -0.5 | |||
4,320,937 | + | -0.1 | |||
4,321,008 | - | +8.6 | |||
4,321,144 | - | +9.2 | |||
4,321,193 | - | +9.1 | |||
4,321,193 | - | +0.6 | |||
4,321,193 | - | +1.3 | |||
4,321,208 | - | +4.5 | |||
4,321,248 | - | +11.3 | |||
4,321,254 | + | +0.2 | |||
4,321,308 | + | -0.8 | |||
4,321,310 | + | -1.2 | |||
4,321,310 | + | +0.1 | |||
4,321,316 | - | +11.4 | |||
4,321,421 | - | +12.1 | |||
4,321,440 | - | +12.2 | |||
4,321,440 | - | +12.5 | |||
4,321,512 | - | phnD | b4105 | 0.15 | +12.2 |
4,321,572 | + | phnD | b4105 | 0.21 | -0.6 |
4,321,637 | - | phnD | b4105 | 0.27 | +11.9 |
4,321,637 | - | phnD | b4105 | 0.27 | +11.9 |
4,321,713 | - | phnD | b4105 | 0.35 | +11.2 |
4,321,713 | - | phnD | b4105 | 0.35 | +11.7 |
4,321,716 | + | phnD | b4105 | 0.35 | -0.3 |
4,321,834 | + | phnD | b4105 | 0.47 | -0.1 |
4,321,834 | + | phnD | b4105 | 0.47 | +0.6 |
Or see this region's nucleotide sequence