Strain Fitness in Escherichia coli BW25113 around b1880
Experiment: Phosphomycin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Phosphomycin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,962,154 | + | flhA | b1879 | 0.56 | -0.6 |
1,962,257 | + | flhA | b1879 | 0.61 | -0.6 |
1,962,265 | - | flhA | b1879 | 0.61 | -1.1 |
1,962,265 | - | flhA | b1879 | 0.61 | -0.5 |
1,962,513 | + | flhA | b1879 | 0.73 | +0.9 |
1,962,513 | + | flhA | b1879 | 0.73 | +0.3 |
1,962,958 | - | -0.3 | |||
1,963,140 | - | -0.1 | |||
1,963,140 | - | -1.5 | |||
1,963,206 | + | flhB | b1880 | 0.12 | -2.3 |
1,963,214 | - | flhB | b1880 | 0.13 | -0.4 |
1,963,214 | - | flhB | b1880 | 0.13 | -0.2 |
1,963,245 | + | flhB | b1880 | 0.15 | -0.2 |
1,963,349 | - | flhB | b1880 | 0.25 | -0.2 |
1,963,501 | - | flhB | b1880 | 0.38 | -0.7 |
1,963,599 | + | flhB | b1880 | 0.46 | +0.1 |
1,963,636 | - | flhB | b1880 | 0.50 | -0.0 |
1,963,647 | - | flhB | b1880 | 0.50 | -0.3 |
1,963,647 | - | flhB | b1880 | 0.50 | +0.1 |
1,963,705 | - | flhB | b1880 | 0.56 | -1.1 |
1,963,946 | + | flhB | b1880 | 0.77 | +0.4 |
1,964,064 | - | flhB | b1880 | 0.87 | -0.3 |
1,964,080 | + | flhB | b1880 | 0.88 | -1.9 |
1,964,080 | + | flhB | b1880 | 0.88 | +0.8 |
1,964,088 | + | flhB | b1880 | 0.89 | -1.6 |
1,964,507 | - | cheZ | b1881 | 0.14 | -0.2 |
1,964,609 | - | cheZ | b1881 | 0.30 | -0.9 |
1,964,847 | - | cheZ | b1881 | 0.67 | -0.3 |
1,964,889 | + | cheZ | b1881 | 0.73 | -0.1 |
Or see this region's nucleotide sequence