Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5181 and Atu5182 are separated by 95 nucleotides Atu5182 and Atu5183 are separated by 85 nucleotides Atu5183 and Atu5184 are separated by 191 nucleotides
Atu5181: Atu5181 - short chain dehydrogenase, at 178,200 to 178,937
Atu5181
Atu5182: Atu5182 - quinone oxidoreductase, at 179,033 to 179,968
Atu5182
Atu5183: Atu5183 - hypothetical protein, at 180,054 to 180,650
Atu5183
Atu5184: Atu5184 - LysR family transcriptional regulator, at 180,842 to 181,771
Atu5184
Position (kb) 179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.060 kb on + strand at 178.075 kb on + strand at 178.196 kb on + strand at 178.198 kb on + strand at 178.204 kb on - strand at 178.204 kb on - strand at 178.204 kb on - strand at 178.204 kb on - strand at 178.204 kb on - strand at 178.206 kb on - strand at 178.229 kb on + strand at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.319 kb on + strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.327 kb on - strand, within Atu5181 at 178.405 kb on + strand, within Atu5181 at 178.418 kb on + strand, within Atu5181 at 178.550 kb on + strand, within Atu5181 at 178.642 kb on + strand, within Atu5181 at 178.737 kb on - strand, within Atu5181 at 178.738 kb on - strand, within Atu5181 at 178.738 kb on - strand, within Atu5181 at 179.006 kb on + strand at 179.021 kb on + strand at 179.139 kb on - strand, within Atu5182 at 179.142 kb on + strand, within Atu5182 at 179.142 kb on + strand, within Atu5182 at 179.150 kb on - strand, within Atu5182 at 179.150 kb on - strand, within Atu5182 at 179.165 kb on - strand, within Atu5182 at 179.165 kb on - strand, within Atu5182 at 179.227 kb on + strand, within Atu5182 at 179.235 kb on - strand, within Atu5182 at 179.235 kb on - strand, within Atu5182 at 179.263 kb on - strand, within Atu5182 at 179.265 kb on + strand, within Atu5182 at 179.267 kb on - strand, within Atu5182 at 179.314 kb on + strand, within Atu5182 at 179.373 kb on - strand, within Atu5182 at 179.494 kb on - strand, within Atu5182 at 179.506 kb on + strand, within Atu5182 at 179.506 kb on + strand, within Atu5182 at 179.506 kb on + strand, within Atu5182 at 179.514 kb on - strand, within Atu5182 at 179.547 kb on + strand, within Atu5182 at 179.557 kb on - strand, within Atu5182 at 179.585 kb on + strand, within Atu5182 at 179.604 kb on + strand, within Atu5182 at 179.619 kb on + strand, within Atu5182 at 179.693 kb on - strand, within Atu5182 at 179.715 kb on - strand, within Atu5182 at 179.734 kb on - strand, within Atu5182 at 179.768 kb on + strand, within Atu5182 at 179.769 kb on + strand, within Atu5182 at 179.794 kb on - strand, within Atu5182 at 179.817 kb on + strand, within Atu5182 at 179.889 kb on + strand at 179.897 kb on - strand at 179.921 kb on + strand at 180.042 kb on - strand at 180.050 kb on - strand at 180.094 kb on + strand at 180.231 kb on - strand, within Atu5183 at 180.247 kb on - strand, within Atu5183 at 180.301 kb on + strand, within Atu5183 at 180.355 kb on + strand, within Atu5183 at 180.358 kb on + strand, within Atu5183 at 180.471 kb on + strand, within Atu5183 at 180.479 kb on - strand, within Atu5183 at 180.485 kb on + strand, within Atu5183 at 180.496 kb on + strand, within Atu5183 at 180.536 kb on + strand, within Atu5183 at 180.561 kb on - strand, within Atu5183 at 180.627 kb on - strand at 180.644 kb on - strand at 180.646 kb on + strand at 180.652 kb on + strand at 180.659 kb on + strand at 180.667 kb on - strand at 180.858 kb on + strand at 180.859 kb on + strand at 180.917 kb on + strand at 180.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 178,060 + +0.3 178,075 + +2.4 178,196 + -1.8 178,198 + -0.1 178,204 - -0.4 178,204 - +0.6 178,204 - -0.8 178,204 - -0.0 178,204 - +0.5 178,206 - +0.1 178,229 + +0.2 178,319 + Atu5181 0.16 +0.8 178,319 + Atu5181 0.16 -1.5 178,319 + Atu5181 0.16 -1.1 178,319 + Atu5181 0.16 +0.6 178,319 + Atu5181 0.16 +1.7 178,319 + Atu5181 0.16 -2.6 178,319 + Atu5181 0.16 +0.5 178,319 + Atu5181 0.16 -0.5 178,327 - Atu5181 0.17 -0.6 178,327 - Atu5181 0.17 -1.8 178,327 - Atu5181 0.17 +0.4 178,327 - Atu5181 0.17 -0.6 178,327 - Atu5181 0.17 +0.1 178,327 - Atu5181 0.17 -2.0 178,405 + Atu5181 0.28 +1.5 178,418 + Atu5181 0.30 -1.6 178,550 + Atu5181 0.47 -0.5 178,642 + Atu5181 0.60 -0.7 178,737 - Atu5181 0.73 -0.1 178,738 - Atu5181 0.73 -1.3 178,738 - Atu5181 0.73 +0.1 179,006 + -0.1 179,021 + -0.0 179,139 - Atu5182 0.11 -0.1 179,142 + Atu5182 0.12 +0.1 179,142 + Atu5182 0.12 -0.0 179,150 - Atu5182 0.12 +0.6 179,150 - Atu5182 0.12 -1.7 179,165 - Atu5182 0.14 -0.1 179,165 - Atu5182 0.14 +0.3 179,227 + Atu5182 0.21 +0.2 179,235 - Atu5182 0.22 +0.6 179,235 - Atu5182 0.22 -0.3 179,263 - Atu5182 0.25 +0.4 179,265 + Atu5182 0.25 -0.1 179,267 - Atu5182 0.25 -0.6 179,314 + Atu5182 0.30 +0.0 179,373 - Atu5182 0.36 -0.5 179,494 - Atu5182 0.49 +0.2 179,506 + Atu5182 0.51 +0.6 179,506 + Atu5182 0.51 -2.4 179,506 + Atu5182 0.51 -0.1 179,514 - Atu5182 0.51 -0.7 179,547 + Atu5182 0.55 -1.1 179,557 - Atu5182 0.56 -2.2 179,585 + Atu5182 0.59 +0.0 179,604 + Atu5182 0.61 -0.9 179,619 + Atu5182 0.63 -1.1 179,693 - Atu5182 0.71 -0.6 179,715 - Atu5182 0.73 -2.5 179,734 - Atu5182 0.75 +0.5 179,768 + Atu5182 0.79 -0.1 179,769 + Atu5182 0.79 -0.3 179,794 - Atu5182 0.81 +0.7 179,817 + Atu5182 0.84 +0.0 179,889 + -0.5 179,897 - +0.3 179,921 + -0.4 180,042 - +0.1 180,050 - -0.5 180,094 + +1.1 180,231 - Atu5183 0.30 +0.8 180,247 - Atu5183 0.32 -2.1 180,301 + Atu5183 0.41 -0.3 180,355 + Atu5183 0.50 +0.7 180,358 + Atu5183 0.51 +0.5 180,471 + Atu5183 0.70 -1.6 180,479 - Atu5183 0.71 -0.9 180,485 + Atu5183 0.72 +0.1 180,496 + Atu5183 0.74 -0.7 180,536 + Atu5183 0.81 -0.6 180,561 - Atu5183 0.85 +0.5 180,627 - +0.6 180,644 - -0.2 180,646 + -1.0 180,652 + +0.2 180,659 + -0.4 180,667 - -1.3 180,858 + -0.1 180,859 + +0.5 180,917 + -0.2 180,925 - -0.8
Or see this region's nucleotide sequence