Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3250 and Atu3251 are separated by 113 nucleotides Atu3251 and Atu3252 are separated by 165 nucleotides Atu3252 and Atu3253 are separated by 62 nucleotides
Atu3250: Atu3250 - hypothetical protein, at 267,841 to 268,083
Atu3250
Atu3251: Atu3251 - haloacid dehalogenase, at 268,197 to 268,883
Atu3251
Atu3252: Atu3252 - GntR family transcriptional regulator, at 269,049 to 269,765
Atu3252
Atu3253: Atu3253 - ABC transporter substrate binding protein, at 269,828 to 270,802
Atu3253
Position (kb) 269
270 Strain fitness (log2 ratio) -2
-1
0
1
2 at 268.176 kb on - strand at 268.264 kb on - strand at 268.285 kb on - strand, within Atu3251 at 268.291 kb on + strand, within Atu3251 at 268.341 kb on - strand, within Atu3251 at 268.394 kb on - strand, within Atu3251 at 268.461 kb on - strand, within Atu3251 at 268.541 kb on - strand, within Atu3251 at 268.550 kb on + strand, within Atu3251 at 268.593 kb on - strand, within Atu3251 at 268.633 kb on - strand, within Atu3251 at 268.686 kb on + strand, within Atu3251 at 268.694 kb on - strand, within Atu3251 at 268.740 kb on + strand, within Atu3251 at 268.750 kb on - strand, within Atu3251 at 268.750 kb on - strand, within Atu3251 at 268.777 kb on + strand, within Atu3251 at 268.868 kb on - strand at 268.878 kb on + strand at 268.878 kb on + strand at 268.886 kb on - strand at 268.886 kb on - strand at 268.886 kb on - strand at 268.915 kb on + strand at 268.929 kb on + strand at 268.929 kb on + strand at 269.028 kb on + strand at 269.129 kb on + strand, within Atu3252 at 269.250 kb on + strand, within Atu3252 at 269.280 kb on + strand, within Atu3252 at 269.349 kb on + strand, within Atu3252 at 269.442 kb on + strand, within Atu3252 at 269.762 kb on - strand at 269.862 kb on - strand at 269.959 kb on + strand, within Atu3253 at 269.959 kb on + strand, within Atu3253 at 270.056 kb on - strand, within Atu3253 at 270.060 kb on + strand, within Atu3253 at 270.132 kb on + strand, within Atu3253 at 270.211 kb on + strand, within Atu3253 at 270.285 kb on + strand, within Atu3253 at 270.329 kb on - strand, within Atu3253 at 270.336 kb on + strand, within Atu3253 at 270.422 kb on + strand, within Atu3253 at 270.422 kb on - strand, within Atu3253 at 270.530 kb on - strand, within Atu3253 at 270.535 kb on + strand, within Atu3253 at 270.556 kb on + strand, within Atu3253 at 270.564 kb on - strand, within Atu3253 at 270.569 kb on - strand, within Atu3253 at 270.569 kb on - strand, within Atu3253 at 270.617 kb on + strand, within Atu3253 at 270.629 kb on + strand, within Atu3253 at 270.629 kb on + strand, within Atu3253 at 270.691 kb on - strand, within Atu3253 at 270.763 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 268,176 - -0.5 268,264 - -0.2 268,285 - Atu3251 0.13 +0.8 268,291 + Atu3251 0.14 +1.0 268,341 - Atu3251 0.21 -0.4 268,394 - Atu3251 0.29 +0.6 268,461 - Atu3251 0.38 +1.1 268,541 - Atu3251 0.50 -2.0 268,550 + Atu3251 0.51 +0.9 268,593 - Atu3251 0.58 +1.3 268,633 - Atu3251 0.63 -0.1 268,686 + Atu3251 0.71 -1.3 268,694 - Atu3251 0.72 -0.3 268,740 + Atu3251 0.79 -0.1 268,750 - Atu3251 0.80 -0.9 268,750 - Atu3251 0.80 +1.3 268,777 + Atu3251 0.84 +0.0 268,868 - -0.3 268,878 + -0.6 268,878 + -2.4 268,886 - +0.4 268,886 - +1.7 268,886 - -0.1 268,915 + +0.7 268,929 + -0.3 268,929 + -0.7 269,028 + -1.3 269,129 + Atu3252 0.11 +1.4 269,250 + Atu3252 0.28 +0.2 269,280 + Atu3252 0.32 +0.7 269,349 + Atu3252 0.42 +0.4 269,442 + Atu3252 0.55 +1.1 269,762 - -1.0 269,862 - +1.4 269,959 + Atu3253 0.13 +0.4 269,959 + Atu3253 0.13 +1.3 270,056 - Atu3253 0.23 +0.1 270,060 + Atu3253 0.24 -0.4 270,132 + Atu3253 0.31 -1.1 270,211 + Atu3253 0.39 +0.1 270,285 + Atu3253 0.47 +0.4 270,329 - Atu3253 0.51 +2.7 270,336 + Atu3253 0.52 +1.9 270,422 + Atu3253 0.61 +0.6 270,422 - Atu3253 0.61 +0.6 270,530 - Atu3253 0.72 +0.3 270,535 + Atu3253 0.73 +0.4 270,556 + Atu3253 0.75 +1.6 270,564 - Atu3253 0.75 +1.6 270,569 - Atu3253 0.76 +0.2 270,569 - Atu3253 0.76 -0.1 270,617 + Atu3253 0.81 +0.6 270,629 + Atu3253 0.82 +1.9 270,629 + Atu3253 0.82 -0.3 270,691 - Atu3253 0.89 +1.5 270,763 + -1.5
Or see this region's nucleotide sequence