Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0986 and Atu0987 are separated by 50 nucleotides Atu0987 and Atu0988 are separated by 43 nucleotides Atu0988 and Atu0989 are separated by 483 nucleotides
Atu0986: Atu0986 - hypothetical protein, at 981,911 to 982,099
Atu0986
Atu0987: Atu0987 - DNA polymerase, at 982,150 to 983,040
Atu0987
Atu0988: Atu0988 - molecular chaperone, Hsp70 family, at 983,084 to 984,382
Atu0988
Atu0989: Atu0989 - hypothetical protein, at 984,866 to 985,771
Atu0989
Position (kb) 983
984
985 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 982.097 kb on - strand at 982.133 kb on + strand at 982.133 kb on + strand at 982.141 kb on - strand at 982.141 kb on - strand at 983.091 kb on + strand at 983.091 kb on + strand at 983.091 kb on + strand at 983.099 kb on - strand at 983.245 kb on - strand, within Atu0988 at 983.287 kb on - strand, within Atu0988 at 983.372 kb on - strand, within Atu0988 at 983.378 kb on - strand, within Atu0988 at 983.427 kb on - strand, within Atu0988 at 983.432 kb on + strand, within Atu0988 at 983.468 kb on - strand, within Atu0988 at 983.468 kb on - strand, within Atu0988 at 983.515 kb on - strand, within Atu0988 at 983.519 kb on + strand, within Atu0988 at 983.556 kb on - strand, within Atu0988 at 983.659 kb on + strand, within Atu0988 at 983.839 kb on + strand, within Atu0988 at 983.848 kb on - strand, within Atu0988 at 984.030 kb on + strand, within Atu0988 at 984.037 kb on - strand, within Atu0988 at 984.084 kb on + strand, within Atu0988 at 984.099 kb on + strand, within Atu0988 at 984.099 kb on + strand, within Atu0988 at 984.099 kb on + strand, within Atu0988 at 984.107 kb on - strand, within Atu0988 at 984.235 kb on + strand, within Atu0988 at 984.260 kb on + strand at 984.268 kb on - strand at 984.384 kb on + strand at 984.418 kb on + strand at 984.421 kb on - strand at 984.424 kb on + strand at 984.451 kb on + strand at 984.475 kb on - strand at 984.507 kb on + strand at 984.630 kb on - strand at 984.818 kb on + strand at 984.831 kb on - strand at 984.861 kb on - strand at 984.867 kb on - strand at 984.906 kb on - strand at 985.044 kb on + strand, within Atu0989 at 985.055 kb on + strand, within Atu0989 at 985.138 kb on - strand, within Atu0989 at 985.160 kb on - strand, within Atu0989 at 985.230 kb on + strand, within Atu0989 at 985.256 kb on + strand, within Atu0989 at 985.278 kb on - strand, within Atu0989 at 985.349 kb on + strand, within Atu0989 at 985.362 kb on - strand, within Atu0989
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 982,097 - -2.4 982,133 + +0.2 982,133 + -0.0 982,141 - -0.5 982,141 - +0.8 983,091 + -1.5 983,091 + +1.9 983,091 + -0.8 983,099 - -3.8 983,245 - Atu0988 0.12 +1.2 983,287 - Atu0988 0.16 -0.1 983,372 - Atu0988 0.22 -0.3 983,378 - Atu0988 0.23 -1.1 983,427 - Atu0988 0.26 +0.5 983,432 + Atu0988 0.27 -0.3 983,468 - Atu0988 0.30 +0.3 983,468 - Atu0988 0.30 +0.3 983,515 - Atu0988 0.33 -0.0 983,519 + Atu0988 0.33 +0.1 983,556 - Atu0988 0.36 +1.5 983,659 + Atu0988 0.44 -0.8 983,839 + Atu0988 0.58 +0.2 983,848 - Atu0988 0.59 -1.3 984,030 + Atu0988 0.73 -0.3 984,037 - Atu0988 0.73 -1.3 984,084 + Atu0988 0.77 -0.0 984,099 + Atu0988 0.78 +1.2 984,099 + Atu0988 0.78 +0.2 984,099 + Atu0988 0.78 -1.1 984,107 - Atu0988 0.79 -0.9 984,235 + Atu0988 0.89 +0.0 984,260 + +2.6 984,268 - -0.5 984,384 + -1.8 984,418 + -0.8 984,421 - -0.4 984,424 + -0.1 984,451 + -0.3 984,475 - -0.5 984,507 + -0.5 984,630 - +0.4 984,818 + -2.1 984,831 - +0.7 984,861 - -0.6 984,867 - -0.0 984,906 - -0.6 985,044 + Atu0989 0.20 -0.3 985,055 + Atu0989 0.21 -2.0 985,138 - Atu0989 0.30 -0.3 985,160 - Atu0989 0.32 -0.2 985,230 + Atu0989 0.40 +0.0 985,256 + Atu0989 0.43 -0.3 985,278 - Atu0989 0.45 +1.8 985,349 + Atu0989 0.53 -0.1 985,362 - Atu0989 0.55 +0.5
Or see this region's nucleotide sequence