Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0786 and Atu0787 are separated by 21 nucleotides Atu0787 and Atu0788 are separated by 68 nucleotides Atu0788 and Atu0789 are separated by 212 nucleotides
Atu0786: Atu0786 - peptidase, family M16, at 783,199 to 784,497
Atu0786
Atu0787: Atu0787 - threonine synthase, at 784,519 to 786,090
Atu0787
Atu0788: Atu0788 - hypothetical protein, at 786,159 to 786,731
Atu0788
Atu0789: Atu0789 - hypothetical protein, at 786,944 to 787,129
Atu0789
Position (kb) 784
785
786
787 Strain fitness (log2 ratio) -2
-1
0
1
2 at 783.682 kb on - strand, within Atu0786 at 783.860 kb on - strand, within Atu0786 at 784.187 kb on - strand, within Atu0786 at 784.212 kb on - strand, within Atu0786 at 784.244 kb on - strand, within Atu0786 at 784.341 kb on - strand, within Atu0786 at 784.485 kb on + strand at 784.491 kb on + strand at 784.493 kb on - strand at 784.493 kb on - strand at 784.493 kb on - strand at 784.493 kb on - strand at 784.505 kb on - strand at 784.527 kb on - strand at 785.933 kb on - strand at 786.073 kb on + strand at 786.073 kb on + strand at 786.081 kb on - strand at 786.084 kb on + strand at 786.092 kb on - strand at 786.092 kb on - strand at 786.257 kb on + strand, within Atu0788 at 786.272 kb on + strand, within Atu0788 at 786.272 kb on + strand, within Atu0788 at 786.272 kb on + strand, within Atu0788 at 786.414 kb on + strand, within Atu0788 at 786.427 kb on - strand, within Atu0788 at 786.467 kb on + strand, within Atu0788 at 786.513 kb on + strand, within Atu0788 at 786.539 kb on - strand, within Atu0788 at 786.710 kb on + strand at 786.710 kb on + strand at 786.815 kb on - strand at 786.863 kb on + strand at 786.873 kb on + strand at 786.873 kb on + strand at 786.873 kb on + strand at 786.873 kb on + strand at 786.881 kb on - strand at 786.881 kb on - strand at 786.881 kb on - strand at 786.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 783,682 - Atu0786 0.37 -1.2 783,860 - Atu0786 0.51 -0.6 784,187 - Atu0786 0.76 -1.5 784,212 - Atu0786 0.78 -0.9 784,244 - Atu0786 0.80 -0.0 784,341 - Atu0786 0.88 +1.0 784,485 + +0.9 784,491 + -0.7 784,493 - -1.2 784,493 - -0.6 784,493 - -0.4 784,493 - -0.6 784,505 - -1.1 784,527 - +0.2 785,933 - -0.2 786,073 + -0.9 786,073 + +0.3 786,081 - -0.2 786,084 + -0.3 786,092 - -0.3 786,092 - -0.2 786,257 + Atu0788 0.17 +0.3 786,272 + Atu0788 0.20 -0.3 786,272 + Atu0788 0.20 +1.9 786,272 + Atu0788 0.20 -2.7 786,414 + Atu0788 0.45 +2.7 786,427 - Atu0788 0.47 -0.3 786,467 + Atu0788 0.54 -1.5 786,513 + Atu0788 0.62 +2.4 786,539 - Atu0788 0.66 +1.5 786,710 + +0.6 786,710 + +0.0 786,815 - -0.3 786,863 + -1.6 786,873 + -1.7 786,873 + -1.0 786,873 + +1.2 786,873 + -0.6 786,881 - -0.2 786,881 - -1.2 786,881 - -0.3 786,942 + -0.7
Or see this region's nucleotide sequence