Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0783 and Atu0784 are separated by 178 nucleotides Atu0784 and Atu0785 overlap by 4 nucleotides Atu0785 and Atu0786 are separated by 93 nucleotides
Atu0783: Atu0783 - hypothetical protein, at 778,210 to 779,415
Atu0783
Atu0784: Atu0784 - hypothetical protein, at 779,594 to 782,509
Atu0784
Atu0785: Atu0785 - ribosomal-protein (S5)-alanine N-acetyltransferase, at 782,506 to 783,105
Atu0785
Atu0786: Atu0786 - peptidase, family M16, at 783,199 to 784,497
Atu0786
Position (kb) 779
780
781
782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 778.631 kb on + strand, within Atu0783 at 778.691 kb on - strand, within Atu0783 at 778.705 kb on + strand, within Atu0783 at 778.821 kb on + strand, within Atu0783 at 779.067 kb on - strand, within Atu0783 at 779.130 kb on + strand, within Atu0783 at 779.201 kb on + strand, within Atu0783 at 779.283 kb on + strand, within Atu0783 at 779.304 kb on + strand at 779.304 kb on + strand at 779.312 kb on - strand at 779.446 kb on - strand at 779.486 kb on - strand at 779.538 kb on + strand at 779.583 kb on - strand at 779.651 kb on + strand at 779.792 kb on - strand at 779.969 kb on - strand, within Atu0784 at 780.201 kb on - strand, within Atu0784 at 780.205 kb on + strand, within Atu0784 at 780.326 kb on + strand, within Atu0784 at 782.518 kb on - strand at 782.757 kb on - strand, within Atu0785 at 782.779 kb on - strand, within Atu0785 at 782.794 kb on + strand, within Atu0785 at 782.797 kb on - strand, within Atu0785 at 782.802 kb on - strand, within Atu0785 at 783.046 kb on - strand at 783.051 kb on + strand at 783.064 kb on - strand at 783.066 kb on + strand at 783.125 kb on - strand at 783.210 kb on + strand at 783.210 kb on + strand at 783.337 kb on + strand, within Atu0786
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 778,631 + Atu0783 0.35 -0.2 778,691 - Atu0783 0.40 +0.6 778,705 + Atu0783 0.41 +0.4 778,821 + Atu0783 0.51 +0.4 779,067 - Atu0783 0.71 +0.2 779,130 + Atu0783 0.76 -0.5 779,201 + Atu0783 0.82 +0.1 779,283 + Atu0783 0.89 +0.2 779,304 + +1.1 779,304 + +0.7 779,312 - -1.5 779,446 - -0.0 779,486 - -0.9 779,538 + -2.8 779,583 - +0.0 779,651 + -2.2 779,792 - -2.5 779,969 - Atu0784 0.13 -0.3 780,201 - Atu0784 0.21 -2.4 780,205 + Atu0784 0.21 -3.0 780,326 + Atu0784 0.25 -1.4 782,518 - -0.9 782,757 - Atu0785 0.42 +0.1 782,779 - Atu0785 0.46 -0.7 782,794 + Atu0785 0.48 -0.1 782,797 - Atu0785 0.48 -0.1 782,802 - Atu0785 0.49 -0.6 783,046 - +0.9 783,051 + +1.5 783,064 - +0.8 783,066 + -1.3 783,125 - +0.8 783,210 + -0.4 783,210 + +0.7 783,337 + Atu0786 0.11 +2.4
Or see this region's nucleotide sequence