Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0496 and Atu8130 are separated by 157 nucleotides Atu8130 and Atu0498 are separated by 32 nucleotides Atu0498 and Atu0499 are separated by 264 nucleotides
Atu0496: Atu0496 - hypothetical protein, at 483,264 to 483,701
Atu0496
Atu8130: Atu8130 - hypothetical protein, at 483,859 to 484,650
Atu8130
Atu0498: Atu0498 - hypothetical protein, at 484,683 to 485,609
Atu0498
Atu0499: Atu0499 - hypothetical protein, at 485,874 to 489,620
Atu0499
Position (kb) 484
485
486 Strain fitness (log2 ratio) -2
-1
0
1
2 at 483.723 kb on + strand at 483.769 kb on - strand at 483.964 kb on + strand, within Atu8130 at 483.996 kb on + strand, within Atu8130 at 484.004 kb on - strand, within Atu8130 at 484.030 kb on + strand, within Atu8130 at 484.094 kb on + strand, within Atu8130 at 484.094 kb on + strand, within Atu8130 at 484.102 kb on - strand, within Atu8130 at 484.102 kb on - strand, within Atu8130 at 484.172 kb on + strand, within Atu8130 at 484.247 kb on + strand, within Atu8130 at 484.254 kb on + strand, within Atu8130 at 484.262 kb on - strand, within Atu8130 at 484.324 kb on - strand, within Atu8130 at 484.350 kb on - strand, within Atu8130 at 484.441 kb on - strand, within Atu8130 at 484.469 kb on + strand, within Atu8130 at 484.477 kb on - strand, within Atu8130 at 484.586 kb on - strand at 484.643 kb on - strand at 484.697 kb on + strand at 484.741 kb on - strand at 484.796 kb on + strand, within Atu0498 at 484.804 kb on - strand, within Atu0498 at 484.920 kb on + strand, within Atu0498 at 484.964 kb on + strand, within Atu0498 at 485.033 kb on - strand, within Atu0498 at 485.042 kb on + strand, within Atu0498 at 485.050 kb on - strand, within Atu0498 at 485.161 kb on - strand, within Atu0498 at 485.249 kb on - strand, within Atu0498 at 485.331 kb on - strand, within Atu0498 at 485.362 kb on - strand, within Atu0498 at 485.367 kb on - strand, within Atu0498 at 485.386 kb on - strand, within Atu0498 at 485.440 kb on - strand, within Atu0498 at 485.502 kb on + strand, within Atu0498 at 485.720 kb on - strand at 485.720 kb on - strand at 485.720 kb on - strand at 485.736 kb on + strand at 485.744 kb on - strand at 485.755 kb on - strand at 485.807 kb on + strand at 485.974 kb on - strand at 486.033 kb on + strand at 486.150 kb on - strand at 486.157 kb on - strand at 486.163 kb on + strand at 486.222 kb on + strand at 486.385 kb on + strand, within Atu0499 at 486.413 kb on + strand, within Atu0499 at 486.421 kb on - strand, within Atu0499 at 486.421 kb on - strand, within Atu0499 at 486.454 kb on + strand, within Atu0499 at 486.464 kb on + strand, within Atu0499 at 486.484 kb on - strand, within Atu0499 at 486.583 kb on + strand, within Atu0499
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 483,723 + -2.4 483,769 - +1.1 483,964 + Atu8130 0.13 +1.0 483,996 + Atu8130 0.17 -0.1 484,004 - Atu8130 0.18 -0.9 484,030 + Atu8130 0.22 -0.9 484,094 + Atu8130 0.30 -1.0 484,094 + Atu8130 0.30 +1.4 484,102 - Atu8130 0.31 -0.2 484,102 - Atu8130 0.31 +1.0 484,172 + Atu8130 0.40 -0.0 484,247 + Atu8130 0.49 -0.6 484,254 + Atu8130 0.50 -1.0 484,262 - Atu8130 0.51 +0.0 484,324 - Atu8130 0.59 -0.7 484,350 - Atu8130 0.62 +0.1 484,441 - Atu8130 0.73 -1.4 484,469 + Atu8130 0.77 -0.6 484,477 - Atu8130 0.78 -0.2 484,586 - +2.7 484,643 - -0.3 484,697 + +1.8 484,741 - -0.2 484,796 + Atu0498 0.12 -0.2 484,804 - Atu0498 0.13 -0.2 484,920 + Atu0498 0.26 -1.8 484,964 + Atu0498 0.30 +0.0 485,033 - Atu0498 0.38 -1.6 485,042 + Atu0498 0.39 -0.6 485,050 - Atu0498 0.40 -0.1 485,161 - Atu0498 0.52 -2.6 485,249 - Atu0498 0.61 -1.2 485,331 - Atu0498 0.70 -0.5 485,362 - Atu0498 0.73 -0.9 485,367 - Atu0498 0.74 +0.2 485,386 - Atu0498 0.76 -1.2 485,440 - Atu0498 0.82 -0.2 485,502 + Atu0498 0.88 -0.6 485,720 - -0.2 485,720 - -0.7 485,720 - +0.1 485,736 + -0.6 485,744 - -0.3 485,755 - -0.6 485,807 + +0.0 485,974 - -0.9 486,033 + +0.3 486,150 - -1.7 486,157 - -1.3 486,163 + +0.6 486,222 + -1.1 486,385 + Atu0499 0.14 -1.6 486,413 + Atu0499 0.14 -1.8 486,421 - Atu0499 0.15 -2.3 486,421 - Atu0499 0.15 -0.2 486,454 + Atu0499 0.15 -0.9 486,464 + Atu0499 0.16 -1.1 486,484 - Atu0499 0.16 -2.7 486,583 + Atu0499 0.19 -0.8
Or see this region's nucleotide sequence