Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0397 and Atu0398 are separated by 128 nucleotides Atu0398 and Atu0399 are separated by 112 nucleotides
Atu0397: Atu0397 - hypothetical protein, at 391,047 to 392,369
Atu0397
Atu0398: Atu0398 - hypothetical protein, at 392,498 to 393,535
Atu0398
Atu0399: Atu0399 - dihydroorotase, at 393,648 to 394,685
Atu0399
Position (kb) 392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 391.526 kb on - strand, within Atu0397 at 391.529 kb on + strand, within Atu0397 at 391.644 kb on + strand, within Atu0397 at 391.657 kb on - strand, within Atu0397 at 391.662 kb on + strand, within Atu0397 at 391.739 kb on - strand, within Atu0397 at 391.794 kb on + strand, within Atu0397 at 391.926 kb on - strand, within Atu0397 at 391.954 kb on + strand, within Atu0397 at 392.091 kb on + strand, within Atu0397 at 392.099 kb on - strand, within Atu0397 at 392.138 kb on + strand, within Atu0397 at 392.151 kb on - strand, within Atu0397 at 392.155 kb on + strand, within Atu0397 at 392.165 kb on - strand, within Atu0397 at 392.183 kb on + strand, within Atu0397 at 392.278 kb on + strand at 392.286 kb on - strand at 392.382 kb on + strand at 392.382 kb on + strand at 392.387 kb on + strand at 392.589 kb on + strand at 392.642 kb on + strand, within Atu0398 at 392.650 kb on - strand, within Atu0398 at 392.704 kb on - strand, within Atu0398 at 392.878 kb on + strand, within Atu0398 at 392.878 kb on + strand, within Atu0398 at 392.898 kb on + strand, within Atu0398 at 392.920 kb on + strand, within Atu0398 at 392.936 kb on + strand, within Atu0398 at 392.963 kb on - strand, within Atu0398 at 392.977 kb on + strand, within Atu0398 at 392.986 kb on + strand, within Atu0398 at 392.994 kb on - strand, within Atu0398 at 393.023 kb on - strand, within Atu0398 at 393.070 kb on + strand, within Atu0398 at 393.070 kb on + strand, within Atu0398 at 393.070 kb on + strand, within Atu0398 at 393.078 kb on - strand, within Atu0398 at 393.078 kb on - strand, within Atu0398 at 393.113 kb on - strand, within Atu0398 at 393.113 kb on - strand, within Atu0398 at 393.113 kb on - strand, within Atu0398 at 393.309 kb on + strand, within Atu0398 at 393.632 kb on + strand at 393.632 kb on + strand at 393.640 kb on - strand at 393.640 kb on - strand at 393.675 kb on + strand at 393.678 kb on - strand at 394.009 kb on - strand, within Atu0399 at 394.116 kb on + strand, within Atu0399 at 394.116 kb on + strand, within Atu0399 at 394.124 kb on - strand, within Atu0399 at 394.398 kb on + strand, within Atu0399 at 394.449 kb on + strand, within Atu0399 at 394.468 kb on + strand, within Atu0399 at 394.476 kb on - strand, within Atu0399 at 394.516 kb on - strand, within Atu0399
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 391,526 - Atu0397 0.36 +1.2 391,529 + Atu0397 0.36 -0.7 391,644 + Atu0397 0.45 +0.2 391,657 - Atu0397 0.46 +0.5 391,662 + Atu0397 0.46 -1.3 391,739 - Atu0397 0.52 +0.2 391,794 + Atu0397 0.56 -1.0 391,926 - Atu0397 0.66 -1.5 391,954 + Atu0397 0.69 +0.3 392,091 + Atu0397 0.79 +0.3 392,099 - Atu0397 0.80 -2.4 392,138 + Atu0397 0.82 +1.5 392,151 - Atu0397 0.83 -0.4 392,155 + Atu0397 0.84 -0.5 392,165 - Atu0397 0.85 -0.6 392,183 + Atu0397 0.86 +0.2 392,278 + +1.1 392,286 - +0.8 392,382 + -1.7 392,382 + -0.2 392,387 + +0.4 392,589 + +0.3 392,642 + Atu0398 0.14 -0.9 392,650 - Atu0398 0.15 +0.0 392,704 - Atu0398 0.20 +1.5 392,878 + Atu0398 0.37 +0.7 392,878 + Atu0398 0.37 -0.0 392,898 + Atu0398 0.39 -0.8 392,920 + Atu0398 0.41 -0.3 392,936 + Atu0398 0.42 +0.3 392,963 - Atu0398 0.45 -0.2 392,977 + Atu0398 0.46 +1.7 392,986 + Atu0398 0.47 +1.4 392,994 - Atu0398 0.48 -0.1 393,023 - Atu0398 0.51 -0.8 393,070 + Atu0398 0.55 +0.3 393,070 + Atu0398 0.55 +0.4 393,070 + Atu0398 0.55 -0.8 393,078 - Atu0398 0.56 +2.3 393,078 - Atu0398 0.56 +0.5 393,113 - Atu0398 0.59 +0.3 393,113 - Atu0398 0.59 +0.1 393,113 - Atu0398 0.59 -0.3 393,309 + Atu0398 0.78 -0.5 393,632 + -0.7 393,632 + +0.6 393,640 - -0.1 393,640 - -1.3 393,675 + -3.7 393,678 - -0.8 394,009 - Atu0399 0.35 -2.1 394,116 + Atu0399 0.45 -1.7 394,116 + Atu0399 0.45 -2.0 394,124 - Atu0399 0.46 -2.5 394,398 + Atu0399 0.72 -3.0 394,449 + Atu0399 0.77 -1.9 394,468 + Atu0399 0.79 -1.5 394,476 - Atu0399 0.80 -1.1 394,516 - Atu0399 0.84 -1.5
Or see this region's nucleotide sequence