Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0070 and Atu0071 are separated by 16 nucleotides Atu0071 and Atu0072 are separated by 29 nucleotides
Atu0070: Atu0070 - ribonucleoside-diphosphate reductase 2 alpha chain, at 71,679 to 73,760
Atu0070
Atu0071: Atu0071 - ribonucleoside-diphosphate reductase 2 beta chain, at 73,777 to 74,751
Atu0071
Atu0072: Atu0072 - hypothetical protein, at 74,781 to 76,016
Atu0072
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 72.982 kb on + strand, within Atu0070 at 73.032 kb on + strand, within Atu0070 at 73.042 kb on + strand, within Atu0070 at 73.050 kb on - strand, within Atu0070 at 73.171 kb on - strand, within Atu0070 at 73.189 kb on + strand, within Atu0070 at 73.361 kb on + strand, within Atu0070 at 73.465 kb on - strand, within Atu0070 at 73.647 kb on - strand at 73.686 kb on + strand at 73.731 kb on + strand at 73.731 kb on + strand at 73.731 kb on - strand at 73.759 kb on + strand at 73.837 kb on - strand at 73.996 kb on + strand, within Atu0071 at 74.087 kb on - strand, within Atu0071 at 74.140 kb on + strand, within Atu0071 at 74.152 kb on + strand, within Atu0071 at 74.301 kb on + strand, within Atu0071 at 74.306 kb on + strand, within Atu0071 at 74.586 kb on + strand, within Atu0071 at 74.760 kb on - strand at 74.762 kb on + strand at 74.925 kb on + strand, within Atu0072 at 74.935 kb on + strand, within Atu0072 at 74.965 kb on - strand, within Atu0072 at 75.103 kb on + strand, within Atu0072 at 75.109 kb on - strand, within Atu0072 at 75.111 kb on + strand, within Atu0072 at 75.111 kb on + strand, within Atu0072 at 75.121 kb on + strand, within Atu0072 at 75.187 kb on + strand, within Atu0072 at 75.346 kb on - strand, within Atu0072 at 75.378 kb on - strand, within Atu0072 at 75.439 kb on - strand, within Atu0072 at 75.439 kb on - strand, within Atu0072 at 75.439 kb on - strand, within Atu0072 at 75.508 kb on - strand, within Atu0072 at 75.587 kb on - strand, within Atu0072 at 75.726 kb on - strand, within Atu0072
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 72,982 + Atu0070 0.63 -0.5 73,032 + Atu0070 0.65 +0.5 73,042 + Atu0070 0.65 +1.6 73,050 - Atu0070 0.66 -1.5 73,171 - Atu0070 0.72 +2.3 73,189 + Atu0070 0.73 +0.3 73,361 + Atu0070 0.81 -1.9 73,465 - Atu0070 0.86 +0.3 73,647 - +0.2 73,686 + +0.5 73,731 + -1.6 73,731 + +0.5 73,731 - -0.3 73,759 + +0.0 73,837 - -1.1 73,996 + Atu0071 0.22 -0.0 74,087 - Atu0071 0.32 +0.3 74,140 + Atu0071 0.37 +0.1 74,152 + Atu0071 0.38 -0.3 74,301 + Atu0071 0.54 +0.1 74,306 + Atu0071 0.54 -0.9 74,586 + Atu0071 0.83 -0.7 74,760 - -0.6 74,762 + +3.2 74,925 + Atu0072 0.12 -0.1 74,935 + Atu0072 0.12 +1.5 74,965 - Atu0072 0.15 -0.4 75,103 + Atu0072 0.26 +4.3 75,109 - Atu0072 0.27 -0.7 75,111 + Atu0072 0.27 +1.2 75,111 + Atu0072 0.27 +1.1 75,121 + Atu0072 0.28 +0.0 75,187 + Atu0072 0.33 +0.4 75,346 - Atu0072 0.46 -2.7 75,378 - Atu0072 0.48 +0.2 75,439 - Atu0072 0.53 -2.6 75,439 - Atu0072 0.53 -0.1 75,439 - Atu0072 0.53 -1.0 75,508 - Atu0072 0.59 -0.0 75,587 - Atu0072 0.65 +0.1 75,726 - Atu0072 0.76 -0.6
Or see this region's nucleotide sequence