Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3439 and Atu3440 are separated by 19 nucleotides Atu3440 and Atu3441 are separated by 16 nucleotides
Atu3439: Atu3439 - acyl-CoA dehydrogenase, at 485,786 to 487,024
Atu3439
Atu3440: Atu3440 - LysR family transcriptional regulator, at 487,044 to 488,015
Atu3440
Atu3441: Atu3441 - nitrilotriacetate monooxygenase, at 488,032 to 489,384
Atu3441
Position (kb) 487
488
489 Strain fitness (log2 ratio) -1
0
1
2 at 486.052 kb on + strand, within Atu3439 at 486.105 kb on + strand, within Atu3439 at 486.157 kb on - strand, within Atu3439 at 486.183 kb on - strand, within Atu3439 at 486.214 kb on - strand, within Atu3439 at 486.231 kb on - strand, within Atu3439 at 486.231 kb on - strand, within Atu3439 at 486.393 kb on + strand, within Atu3439 at 486.509 kb on - strand, within Atu3439 at 486.581 kb on + strand, within Atu3439 at 486.589 kb on - strand, within Atu3439 at 486.589 kb on - strand, within Atu3439 at 486.589 kb on - strand, within Atu3439 at 486.589 kb on - strand, within Atu3439 at 486.595 kb on + strand, within Atu3439 at 486.605 kb on + strand, within Atu3439 at 486.605 kb on + strand, within Atu3439 at 486.605 kb on + strand, within Atu3439 at 486.605 kb on + strand, within Atu3439 at 486.613 kb on - strand, within Atu3439 at 486.613 kb on - strand, within Atu3439 at 486.613 kb on - strand, within Atu3439 at 486.629 kb on + strand, within Atu3439 at 486.811 kb on + strand, within Atu3439 at 486.843 kb on + strand, within Atu3439 at 486.851 kb on - strand, within Atu3439 at 486.926 kb on + strand at 486.934 kb on - strand at 486.934 kb on - strand at 486.954 kb on - strand at 486.995 kb on - strand at 487.048 kb on + strand at 487.130 kb on + strand at 487.310 kb on - strand, within Atu3440 at 487.382 kb on + strand, within Atu3440 at 487.433 kb on - strand, within Atu3440 at 487.440 kb on - strand, within Atu3440 at 487.446 kb on + strand, within Atu3440 at 487.600 kb on - strand, within Atu3440 at 487.600 kb on - strand, within Atu3440 at 487.609 kb on - strand, within Atu3440 at 487.669 kb on + strand, within Atu3440 at 487.712 kb on - strand, within Atu3440 at 487.712 kb on - strand, within Atu3440 at 487.803 kb on + strand, within Atu3440 at 487.856 kb on + strand, within Atu3440 at 487.891 kb on + strand, within Atu3440 at 487.899 kb on - strand, within Atu3440 at 487.899 kb on - strand, within Atu3440 at 487.920 kb on + strand at 487.923 kb on - strand at 487.938 kb on - strand at 487.986 kb on + strand at 488.027 kb on - strand at 488.116 kb on + strand at 488.285 kb on + strand, within Atu3441 at 488.325 kb on - strand, within Atu3441 at 488.423 kb on + strand, within Atu3441 at 488.433 kb on + strand, within Atu3441 at 488.433 kb on + strand, within Atu3441 at 488.452 kb on - strand, within Atu3441 at 488.475 kb on + strand, within Atu3441 at 488.581 kb on + strand, within Atu3441 at 488.726 kb on - strand, within Atu3441 at 488.726 kb on - strand, within Atu3441 at 488.737 kb on + strand, within Atu3441 at 488.772 kb on + strand, within Atu3441 at 488.781 kb on - strand, within Atu3441 at 488.791 kb on - strand, within Atu3441 at 488.888 kb on - strand, within Atu3441 at 488.967 kb on - strand, within Atu3441 at 488.974 kb on - strand, within Atu3441 at 488.999 kb on - strand, within Atu3441 at 489.010 kb on + strand, within Atu3441
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 486,052 + Atu3439 0.21 +0.9 486,105 + Atu3439 0.26 -0.1 486,157 - Atu3439 0.30 -0.8 486,183 - Atu3439 0.32 -1.5 486,214 - Atu3439 0.35 -0.0 486,231 - Atu3439 0.36 -1.1 486,231 - Atu3439 0.36 -0.5 486,393 + Atu3439 0.49 +1.6 486,509 - Atu3439 0.58 +1.9 486,581 + Atu3439 0.64 -1.4 486,589 - Atu3439 0.65 -0.1 486,589 - Atu3439 0.65 +0.7 486,589 - Atu3439 0.65 -0.8 486,589 - Atu3439 0.65 +0.1 486,595 + Atu3439 0.65 +0.5 486,605 + Atu3439 0.66 +1.2 486,605 + Atu3439 0.66 +0.4 486,605 + Atu3439 0.66 +2.6 486,605 + Atu3439 0.66 -0.5 486,613 - Atu3439 0.67 +1.7 486,613 - Atu3439 0.67 +0.5 486,613 - Atu3439 0.67 +1.0 486,629 + Atu3439 0.68 +0.7 486,811 + Atu3439 0.83 +1.8 486,843 + Atu3439 0.85 +0.7 486,851 - Atu3439 0.86 -0.5 486,926 + -0.7 486,934 - +0.0 486,934 - +0.3 486,954 - -0.2 486,995 - +2.1 487,048 + -0.3 487,130 + -0.8 487,310 - Atu3440 0.27 +0.1 487,382 + Atu3440 0.35 -0.0 487,433 - Atu3440 0.40 +0.2 487,440 - Atu3440 0.41 +1.6 487,446 + Atu3440 0.41 -0.2 487,600 - Atu3440 0.57 +0.1 487,600 - Atu3440 0.57 -0.7 487,609 - Atu3440 0.58 -0.5 487,669 + Atu3440 0.64 -0.0 487,712 - Atu3440 0.69 -0.4 487,712 - Atu3440 0.69 -1.2 487,803 + Atu3440 0.78 +0.2 487,856 + Atu3440 0.84 -0.0 487,891 + Atu3440 0.87 -0.1 487,899 - Atu3440 0.88 -0.5 487,899 - Atu3440 0.88 -1.1 487,920 + +0.4 487,923 - -0.6 487,938 - +2.2 487,986 + -0.0 488,027 - -0.2 488,116 + +0.5 488,285 + Atu3441 0.19 +1.3 488,325 - Atu3441 0.22 -1.1 488,423 + Atu3441 0.29 -1.0 488,433 + Atu3441 0.30 -0.3 488,433 + Atu3441 0.30 -0.6 488,452 - Atu3441 0.31 -1.1 488,475 + Atu3441 0.33 +0.8 488,581 + Atu3441 0.41 +0.6 488,726 - Atu3441 0.51 -0.5 488,726 - Atu3441 0.51 -0.4 488,737 + Atu3441 0.52 -0.3 488,772 + Atu3441 0.55 -0.8 488,781 - Atu3441 0.55 -0.4 488,791 - Atu3441 0.56 -0.4 488,888 - Atu3441 0.63 +0.1 488,967 - Atu3441 0.69 -0.1 488,974 - Atu3441 0.70 -0.3 488,999 - Atu3441 0.71 -0.0 489,010 + Atu3441 0.72 +1.0
Or see this region's nucleotide sequence