Strain Fitness in Agrobacterium fabrum C58 around Atu6150

Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6148 and Atu6149 are separated by 162 nucleotidesAtu6149 and Atu6150 are separated by 2 nucleotidesAtu6150 and Atu6151 are separated by 76 nucleotides Atu6148: Atu6148 - transposase, at 166,498 to 167,382 Atu6148 Atu6149: Atu6149 - hypothetical protein, at 167,545 to 167,880 Atu6149 Atu6150: Atu6150 - P-450 monooxygenase, at 167,883 to 169,142 Atu6150 Atu6151: Atu6151 - P-450 monoxygenase, at 169,219 to 170,394 Atu6151 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 166.902 kb on + strand, within Atu6148at 166.902 kb on + strand, within Atu6148at 166.910 kb on - strand, within Atu6148at 166.915 kb on + strand, within Atu6148at 167.022 kb on + strand, within Atu6148at 167.030 kb on - strand, within Atu6148at 167.030 kb on - strand, within Atu6148at 167.058 kb on + strand, within Atu6148at 167.058 kb on + strand, within Atu6148at 167.110 kb on + strand, within Atu6148at 167.128 kb on - strand, within Atu6148at 167.135 kb on + strand, within Atu6148at 167.143 kb on - strand, within Atu6148at 167.169 kb on + strand, within Atu6148at 167.179 kb on - strand, within Atu6148at 167.205 kb on + strand, within Atu6148at 167.211 kb on - strand, within Atu6148at 167.251 kb on + strand, within Atu6148at 167.254 kb on - strand, within Atu6148at 167.257 kb on - strand, within Atu6148at 167.282 kb on - strand, within Atu6148at 167.284 kb on + strand, within Atu6148at 167.284 kb on + strand, within Atu6148at 167.287 kb on - strand, within Atu6148at 167.292 kb on - strand, within Atu6148at 167.292 kb on - strand, within Atu6148at 167.296 kb on + strandat 167.304 kb on - strandat 167.306 kb on + strandat 167.439 kb on + strandat 167.471 kb on + strandat 167.515 kb on + strandat 167.556 kb on + strandat 167.563 kb on - strandat 167.631 kb on + strand, within Atu6149at 167.631 kb on + strand, within Atu6149at 167.639 kb on - strand, within Atu6149at 167.639 kb on - strand, within Atu6149at 167.659 kb on + strand, within Atu6149at 167.667 kb on - strand, within Atu6149at 167.667 kb on - strand, within Atu6149at 167.670 kb on + strand, within Atu6149at 167.674 kb on + strand, within Atu6149at 167.674 kb on + strand, within Atu6149at 167.689 kb on - strand, within Atu6149at 167.689 kb on - strand, within Atu6149at 167.896 kb on + strandat 167.964 kb on + strandat 168.037 kb on - strand, within Atu6150at 168.069 kb on + strand, within Atu6150at 168.077 kb on - strand, within Atu6150at 168.183 kb on - strand, within Atu6150at 168.259 kb on - strand, within Atu6150at 168.271 kb on - strand, within Atu6150at 168.312 kb on - strand, within Atu6150at 168.442 kb on + strand, within Atu6150at 168.442 kb on + strand, within Atu6150at 168.442 kb on + strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.487 kb on - strand, within Atu6150at 168.493 kb on - strand, within Atu6150at 168.507 kb on + strand, within Atu6150at 168.538 kb on + strand, within Atu6150at 168.550 kb on - strand, within Atu6150at 168.550 kb on - strand, within Atu6150at 168.572 kb on + strand, within Atu6150at 168.580 kb on - strand, within Atu6150at 168.600 kb on + strand, within Atu6150at 168.644 kb on + strand, within Atu6150at 168.645 kb on + strand, within Atu6150at 168.688 kb on + strand, within Atu6150at 168.711 kb on + strand, within Atu6150at 168.723 kb on - strand, within Atu6150at 168.729 kb on - strand, within Atu6150at 168.767 kb on + strand, within Atu6150at 168.786 kb on - strand, within Atu6150at 168.795 kb on + strand, within Atu6150at 168.864 kb on - strand, within Atu6150at 168.870 kb on - strand, within Atu6150at 168.998 kb on - strand, within Atu6150at 169.027 kb on - strandat 169.027 kb on - strandat 169.029 kb on + strandat 169.029 kb on + strandat 169.029 kb on + strandat 169.037 kb on - strandat 169.037 kb on - strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.048 kb on + strandat 169.056 kb on - strandat 169.059 kb on + strandat 169.062 kb on - strandat 169.077 kb on - strandat 169.083 kb on + strandat 169.083 kb on + strandat 169.091 kb on - strandat 169.091 kb on - strandat 169.091 kb on - strandat 169.192 kb on + strandat 169.200 kb on - strandat 169.267 kb on - strandat 169.313 kb on - strandat 169.315 kb on - strandat 169.379 kb on - strand, within Atu6151at 169.397 kb on + strand, within Atu6151at 169.405 kb on - strand, within Atu6151at 169.415 kb on - strand, within Atu6151at 169.415 kb on - strand, within Atu6151at 169.419 kb on + strand, within Atu6151at 169.431 kb on + strand, within Atu6151at 169.439 kb on + strand, within Atu6151at 169.488 kb on + strand, within Atu6151at 169.494 kb on + strand, within Atu6151at 169.500 kb on + strand, within Atu6151at 169.502 kb on - strand, within Atu6151at 169.502 kb on - strand, within Atu6151at 169.502 kb on - strand, within Atu6151at 169.503 kb on - strand, within Atu6151at 169.503 kb on - strand, within Atu6151at 169.592 kb on + strand, within Atu6151at 169.597 kb on + strand, within Atu6151at 169.600 kb on - strand, within Atu6151at 169.619 kb on - strand, within Atu6151at 169.631 kb on + strand, within Atu6151at 169.639 kb on - strand, within Atu6151at 169.639 kb on - strand, within Atu6151at 169.749 kb on - strand, within Atu6151at 169.794 kb on - strand, within Atu6151at 169.816 kb on + strand, within Atu6151at 169.967 kb on + strand, within Atu6151at 169.975 kb on - strand, within Atu6151at 169.977 kb on + strand, within Atu6151at 169.977 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.986 kb on + strand, within Atu6151at 169.994 kb on - strand, within Atu6151at 170.008 kb on + strand, within Atu6151at 170.016 kb on - strand, within Atu6151at 170.036 kb on + strand, within Atu6151at 170.036 kb on + strand, within Atu6151at 170.036 kb on + strand, within Atu6151at 170.044 kb on - strand, within Atu6151at 170.128 kb on + strand, within Atu6151

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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166,902 + Atu6148 0.46 -1.0
166,902 + Atu6148 0.46 -0.7
166,910 - Atu6148 0.47 +1.2
166,915 + Atu6148 0.47 +1.1
167,022 + Atu6148 0.59 -0.5
167,030 - Atu6148 0.60 +0.1
167,030 - Atu6148 0.60 +0.0
167,058 + Atu6148 0.63 +0.0
167,058 + Atu6148 0.63 +0.5
167,110 + Atu6148 0.69 -1.1
167,128 - Atu6148 0.71 -0.1
167,135 + Atu6148 0.72 +1.4
167,143 - Atu6148 0.73 +0.4
167,169 + Atu6148 0.76 +0.2
167,179 - Atu6148 0.77 -1.0
167,205 + Atu6148 0.80 -1.4
167,211 - Atu6148 0.81 -0.6
167,251 + Atu6148 0.85 -0.9
167,254 - Atu6148 0.85 +0.0
167,257 - Atu6148 0.86 +0.4
167,282 - Atu6148 0.89 +0.6
167,284 + Atu6148 0.89 -1.1
167,284 + Atu6148 0.89 +0.5
167,287 - Atu6148 0.89 -0.0
167,292 - Atu6148 0.90 -0.3
167,292 - Atu6148 0.90 -0.3
167,296 + -0.4
167,304 - +0.3
167,306 + -0.3
167,439 + -1.7
167,471 + -0.5
167,515 + +0.4
167,556 + +2.8
167,563 - -0.4
167,631 + Atu6149 0.26 -0.9
167,631 + Atu6149 0.26 -0.1
167,639 - Atu6149 0.28 +0.7
167,639 - Atu6149 0.28 +0.0
167,659 + Atu6149 0.34 -0.7
167,667 - Atu6149 0.36 -0.9
167,667 - Atu6149 0.36 +0.8
167,670 + Atu6149 0.37 -0.1
167,674 + Atu6149 0.38 +0.4
167,674 + Atu6149 0.38 -0.4
167,689 - Atu6149 0.43 +0.2
167,689 - Atu6149 0.43 +0.1
167,896 + -2.6
167,964 + -1.1
168,037 - Atu6150 0.12 -0.6
168,069 + Atu6150 0.15 -1.2
168,077 - Atu6150 0.15 -0.3
168,183 - Atu6150 0.24 -1.1
168,259 - Atu6150 0.30 -0.6
168,271 - Atu6150 0.31 -1.3
168,312 - Atu6150 0.34 -2.8
168,442 + Atu6150 0.44 -0.9
168,442 + Atu6150 0.44 -0.9
168,442 + Atu6150 0.44 +0.5
168,450 - Atu6150 0.45 -1.3
168,450 - Atu6150 0.45 +0.8
168,450 - Atu6150 0.45 -0.9
168,450 - Atu6150 0.45 -1.0
168,450 - Atu6150 0.45 -1.0
168,450 - Atu6150 0.45 -0.1
168,450 - Atu6150 0.45 -0.5
168,487 - Atu6150 0.48 -1.5
168,493 - Atu6150 0.48 -0.0
168,507 + Atu6150 0.50 -0.6
168,538 + Atu6150 0.52 -1.6
168,550 - Atu6150 0.53 -1.1
168,550 - Atu6150 0.53 +0.6
168,572 + Atu6150 0.55 -1.3
168,580 - Atu6150 0.55 -1.4
168,600 + Atu6150 0.57 +0.1
168,644 + Atu6150 0.60 -1.0
168,645 + Atu6150 0.60 -2.4
168,688 + Atu6150 0.64 +0.5
168,711 + Atu6150 0.66 -1.6
168,723 - Atu6150 0.67 -1.8
168,729 - Atu6150 0.67 -0.8
168,767 + Atu6150 0.70 -0.4
168,786 - Atu6150 0.72 -1.4
168,795 + Atu6150 0.72 -2.7
168,864 - Atu6150 0.78 -1.1
168,870 - Atu6150 0.78 -1.4
168,998 - Atu6150 0.88 -1.0
169,027 - -2.0
169,027 - -0.1
169,029 + -0.3
169,029 + -0.6
169,029 + -0.5
169,037 - -1.4
169,037 - -0.5
169,048 + -0.3
169,048 + -0.4
169,048 + -0.6
169,048 + +0.6
169,048 + -1.0
169,048 + +1.1
169,056 - -3.2
169,059 + -1.1
169,062 - +0.3
169,077 - -1.3
169,083 + -1.4
169,083 + -0.1
169,091 - -0.6
169,091 - +2.8
169,091 - -1.6
169,192 + -0.1
169,200 - -0.1
169,267 - +0.3
169,313 - +0.6
169,315 - +0.1
169,379 - Atu6151 0.14 +0.7
169,397 + Atu6151 0.15 -0.0
169,405 - Atu6151 0.16 -0.4
169,415 - Atu6151 0.17 -0.5
169,415 - Atu6151 0.17 -0.1
169,419 + Atu6151 0.17 +0.2
169,431 + Atu6151 0.18 +0.5
169,439 + Atu6151 0.19 -0.3
169,488 + Atu6151 0.23 +0.1
169,494 + Atu6151 0.23 -0.4
169,500 + Atu6151 0.24 -1.3
169,502 - Atu6151 0.24 -0.1
169,502 - Atu6151 0.24 -0.1
169,502 - Atu6151 0.24 +1.0
169,503 - Atu6151 0.24 -0.9
169,503 - Atu6151 0.24 -0.2
169,592 + Atu6151 0.32 -0.2
169,597 + Atu6151 0.32 -2.0
169,600 - Atu6151 0.32 +0.4
169,619 - Atu6151 0.34 +0.5
169,631 + Atu6151 0.35 +0.1
169,639 - Atu6151 0.36 +0.7
169,639 - Atu6151 0.36 -0.0
169,749 - Atu6151 0.45 +0.8
169,794 - Atu6151 0.49 +0.3
169,816 + Atu6151 0.51 +0.6
169,967 + Atu6151 0.64 -0.5
169,975 - Atu6151 0.64 -0.1
169,977 + Atu6151 0.64 -0.0
169,977 + Atu6151 0.64 -0.3
169,986 + Atu6151 0.65 -0.1
169,986 + Atu6151 0.65 -0.7
169,986 + Atu6151 0.65 -1.0
169,986 + Atu6151 0.65 +0.2
169,986 + Atu6151 0.65 -1.9
169,986 + Atu6151 0.65 +0.4
169,986 + Atu6151 0.65 +0.5
169,994 - Atu6151 0.66 -1.4
170,008 + Atu6151 0.67 +1.2
170,016 - Atu6151 0.68 -0.0
170,036 + Atu6151 0.69 +0.1
170,036 + Atu6151 0.69 +0.3
170,036 + Atu6151 0.69 -0.8
170,044 - Atu6151 0.70 -0.4
170,128 + Atu6151 0.77 +0.4

Or see this region's nucleotide sequence