Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5440 and Atu5441 are separated by 266 nucleotides Atu5441 and Atu5442 are separated by 177 nucleotides Atu5442 and Atu5443 are separated by 98 nucleotides Atu5443 and Atu5444 are separated by 110 nucleotides
Atu5440: Atu5440 - hypothetical protein, at 433,391 to 433,621
Atu5440
Atu5441: Atu5441 - ABC transporter substrate binding protein, at 433,888 to 434,406
Atu5441
Atu5442: Atu5442 - methyl-accepting chemotaxis protein, at 434,584 to 436,524
Atu5442
Atu5443: Atu5443 - TetR family transcriptional regulator, at 436,623 to 437,171
Atu5443
Atu5444: Atu5444 - short-chain dehydrogenase, at 437,282 to 438,070
Atu5444
Position (kb) 434
435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 433.594 kb on - strand, within Atu5440 at 433.667 kb on - strand at 433.749 kb on - strand at 433.806 kb on + strand at 433.806 kb on - strand at 433.863 kb on - strand at 433.885 kb on - strand at 433.886 kb on + strand at 433.934 kb on + strand at 433.934 kb on + strand at 433.942 kb on - strand, within Atu5441 at 433.982 kb on - strand, within Atu5441 at 434.023 kb on + strand, within Atu5441 at 434.023 kb on + strand, within Atu5441 at 434.025 kb on + strand, within Atu5441 at 434.031 kb on - strand, within Atu5441 at 434.031 kb on - strand, within Atu5441 at 434.111 kb on - strand, within Atu5441 at 434.131 kb on + strand, within Atu5441 at 434.139 kb on - strand, within Atu5441 at 434.161 kb on + strand, within Atu5441 at 434.184 kb on + strand, within Atu5441 at 434.192 kb on - strand, within Atu5441 at 434.230 kb on + strand, within Atu5441 at 434.273 kb on + strand, within Atu5441 at 434.313 kb on - strand, within Atu5441 at 434.407 kb on - strand at 434.774 kb on - strand at 434.789 kb on - strand, within Atu5442 at 434.822 kb on - strand, within Atu5442 at 434.850 kb on - strand, within Atu5442 at 434.900 kb on - strand, within Atu5442 at 434.975 kb on + strand, within Atu5442 at 434.983 kb on - strand, within Atu5442 at 435.000 kb on + strand, within Atu5442 at 435.000 kb on + strand, within Atu5442 at 435.008 kb on - strand, within Atu5442 at 435.008 kb on - strand, within Atu5442 at 435.008 kb on - strand, within Atu5442 at 435.078 kb on + strand, within Atu5442 at 435.087 kb on - strand, within Atu5442 at 435.090 kb on + strand, within Atu5442 at 435.096 kb on + strand, within Atu5442 at 435.147 kb on + strand, within Atu5442 at 435.155 kb on - strand, within Atu5442 at 435.165 kb on + strand, within Atu5442 at 435.173 kb on - strand, within Atu5442 at 435.175 kb on + strand, within Atu5442 at 435.221 kb on + strand, within Atu5442 at 435.259 kb on + strand, within Atu5442 at 435.274 kb on + strand, within Atu5442 at 435.277 kb on - strand, within Atu5442 at 435.277 kb on - strand, within Atu5442 at 435.282 kb on - strand, within Atu5442 at 435.340 kb on + strand, within Atu5442 at 435.360 kb on - strand, within Atu5442 at 435.384 kb on + strand, within Atu5442 at 435.502 kb on + strand, within Atu5442 at 435.533 kb on + strand, within Atu5442 at 435.546 kb on - strand, within Atu5442 at 435.558 kb on + strand, within Atu5442 at 435.615 kb on + strand, within Atu5442 at 435.615 kb on + strand, within Atu5442 at 435.615 kb on + strand, within Atu5442 at 435.642 kb on - strand, within Atu5442 at 435.666 kb on - strand, within Atu5442 at 435.708 kb on + strand, within Atu5442 at 435.708 kb on + strand, within Atu5442 at 435.747 kb on + strand, within Atu5442 at 435.747 kb on + strand, within Atu5442 at 435.755 kb on - strand, within Atu5442 at 435.755 kb on - strand, within Atu5442 at 435.755 kb on - strand, within Atu5442 at 435.768 kb on - strand, within Atu5442 at 435.768 kb on - strand, within Atu5442 at 435.787 kb on - strand, within Atu5442 at 435.791 kb on - strand, within Atu5442 at 435.861 kb on - strand, within Atu5442 at 435.950 kb on - strand, within Atu5442 at 435.991 kb on + strand, within Atu5442 at 435.991 kb on + strand, within Atu5442 at 435.999 kb on - strand, within Atu5442 at 435.999 kb on - strand, within Atu5442 at 435.999 kb on - strand, within Atu5442 at 436.013 kb on + strand, within Atu5442 at 436.029 kb on - strand, within Atu5442 at 436.070 kb on + strand, within Atu5442 at 436.070 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.072 kb on + strand, within Atu5442 at 436.080 kb on - strand, within Atu5442 at 436.080 kb on - strand, within Atu5442 at 436.088 kb on - strand, within Atu5442 at 436.088 kb on - strand, within Atu5442 at 436.096 kb on + strand, within Atu5442 at 436.096 kb on + strand, within Atu5442 at 436.114 kb on - strand, within Atu5442 at 436.124 kb on - strand, within Atu5442 at 436.199 kb on - strand, within Atu5442 at 436.200 kb on + strand, within Atu5442 at 436.228 kb on - strand, within Atu5442 at 436.238 kb on - strand, within Atu5442 at 436.370 kb on + strand at 436.388 kb on + strand at 436.403 kb on + strand at 436.403 kb on + strand at 436.498 kb on + strand at 436.590 kb on - strand at 436.614 kb on - strand at 436.628 kb on - strand at 436.687 kb on - strand, within Atu5443 at 436.714 kb on + strand, within Atu5443 at 436.762 kb on + strand, within Atu5443 at 436.770 kb on - strand, within Atu5443 at 436.794 kb on - strand, within Atu5443 at 436.809 kb on + strand, within Atu5443 at 436.824 kb on - strand, within Atu5443 at 436.824 kb on - strand, within Atu5443 at 436.840 kb on + strand, within Atu5443 at 436.924 kb on - strand, within Atu5443 at 436.955 kb on + strand, within Atu5443 at 437.014 kb on + strand, within Atu5443 at 437.074 kb on + strand, within Atu5443 at 437.091 kb on + strand, within Atu5443 at 437.300 kb on + strand at 437.300 kb on + strand at 437.364 kb on + strand, within Atu5444 at 437.384 kb on + strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.511 kb on + strand, within Atu5444
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 433,594 - Atu5440 0.88 +1.4 433,667 - +0.0 433,749 - -0.7 433,806 + -0.3 433,806 - -0.2 433,863 - -0.4 433,885 - +1.6 433,886 + -0.8 433,934 + -0.0 433,934 + +1.1 433,942 - Atu5441 0.10 +0.3 433,982 - Atu5441 0.18 -1.3 434,023 + Atu5441 0.26 +0.2 434,023 + Atu5441 0.26 -1.3 434,025 + Atu5441 0.26 +0.7 434,031 - Atu5441 0.28 -0.5 434,031 - Atu5441 0.28 -1.7 434,111 - Atu5441 0.43 +0.0 434,131 + Atu5441 0.47 +0.7 434,139 - Atu5441 0.48 -1.0 434,161 + Atu5441 0.53 -0.8 434,184 + Atu5441 0.57 +0.2 434,192 - Atu5441 0.59 +1.0 434,230 + Atu5441 0.66 -0.2 434,273 + Atu5441 0.74 -0.1 434,313 - Atu5441 0.82 -1.0 434,407 - +0.3 434,774 - -2.2 434,789 - Atu5442 0.11 +0.1 434,822 - Atu5442 0.12 +0.5 434,850 - Atu5442 0.14 -0.4 434,900 - Atu5442 0.16 +0.6 434,975 + Atu5442 0.20 -0.4 434,983 - Atu5442 0.21 -0.0 435,000 + Atu5442 0.21 -0.1 435,000 + Atu5442 0.21 +3.2 435,008 - Atu5442 0.22 +1.8 435,008 - Atu5442 0.22 +0.4 435,008 - Atu5442 0.22 +1.1 435,078 + Atu5442 0.25 +0.4 435,087 - Atu5442 0.26 +0.3 435,090 + Atu5442 0.26 +0.7 435,096 + Atu5442 0.26 +0.2 435,147 + Atu5442 0.29 +0.2 435,155 - Atu5442 0.29 +0.1 435,165 + Atu5442 0.30 -0.3 435,173 - Atu5442 0.30 -0.1 435,175 + Atu5442 0.30 +0.4 435,221 + Atu5442 0.33 +0.3 435,259 + Atu5442 0.35 +1.4 435,274 + Atu5442 0.36 +0.4 435,277 - Atu5442 0.36 -0.2 435,277 - Atu5442 0.36 -1.4 435,282 - Atu5442 0.36 +1.0 435,340 + Atu5442 0.39 -0.6 435,360 - Atu5442 0.40 -0.9 435,384 + Atu5442 0.41 -0.0 435,502 + Atu5442 0.47 +0.1 435,533 + Atu5442 0.49 -0.2 435,546 - Atu5442 0.50 -2.0 435,558 + Atu5442 0.50 -0.7 435,615 + Atu5442 0.53 +0.3 435,615 + Atu5442 0.53 +0.1 435,615 + Atu5442 0.53 +2.4 435,642 - Atu5442 0.55 +0.0 435,666 - Atu5442 0.56 +1.4 435,708 + Atu5442 0.58 +0.4 435,708 + Atu5442 0.58 +0.1 435,747 + Atu5442 0.60 +0.3 435,747 + Atu5442 0.60 -0.4 435,755 - Atu5442 0.60 +0.9 435,755 - Atu5442 0.60 -0.0 435,755 - Atu5442 0.60 +0.4 435,768 - Atu5442 0.61 +0.9 435,768 - Atu5442 0.61 +0.6 435,787 - Atu5442 0.62 -0.2 435,791 - Atu5442 0.62 -0.5 435,861 - Atu5442 0.66 +1.4 435,950 - Atu5442 0.70 +1.5 435,991 + Atu5442 0.72 -0.4 435,991 + Atu5442 0.72 +0.7 435,999 - Atu5442 0.73 +0.4 435,999 - Atu5442 0.73 +0.7 435,999 - Atu5442 0.73 -0.1 436,013 + Atu5442 0.74 -0.2 436,029 - Atu5442 0.74 -0.4 436,070 + Atu5442 0.77 -0.9 436,070 + Atu5442 0.77 +0.4 436,072 + Atu5442 0.77 +0.5 436,072 + Atu5442 0.77 -0.0 436,072 + Atu5442 0.77 +1.4 436,072 + Atu5442 0.77 -0.3 436,072 + Atu5442 0.77 -0.0 436,080 - Atu5442 0.77 +1.1 436,080 - Atu5442 0.77 -0.4 436,088 - Atu5442 0.77 +1.1 436,088 - Atu5442 0.77 -0.3 436,096 + Atu5442 0.78 -0.3 436,096 + Atu5442 0.78 -0.1 436,114 - Atu5442 0.79 +0.6 436,124 - Atu5442 0.79 -0.4 436,199 - Atu5442 0.83 -0.0 436,200 + Atu5442 0.83 -0.2 436,228 - Atu5442 0.85 -0.4 436,238 - Atu5442 0.85 -0.9 436,370 + +0.5 436,388 + +0.1 436,403 + -1.9 436,403 + -0.1 436,498 + -1.2 436,590 - -0.5 436,614 - +0.2 436,628 - +0.8 436,687 - Atu5443 0.12 -0.6 436,714 + Atu5443 0.17 -0.2 436,762 + Atu5443 0.25 -0.9 436,770 - Atu5443 0.27 -0.4 436,794 - Atu5443 0.31 +0.3 436,809 + Atu5443 0.34 -0.7 436,824 - Atu5443 0.37 +0.5 436,824 - Atu5443 0.37 -0.7 436,840 + Atu5443 0.40 -0.9 436,924 - Atu5443 0.55 -0.3 436,955 + Atu5443 0.60 -1.3 437,014 + Atu5443 0.71 -0.1 437,074 + Atu5443 0.82 +1.0 437,091 + Atu5443 0.85 -0.1 437,300 + +0.3 437,300 + -0.7 437,364 + Atu5444 0.10 +1.4 437,384 + Atu5444 0.13 +0.0 437,507 - Atu5444 0.29 +0.5 437,507 - Atu5444 0.29 -0.2 437,507 - Atu5444 0.29 +1.3 437,511 + Atu5444 0.29 +0.2
Or see this region's nucleotide sequence