Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3809 and Atu3810 are separated by 109 nucleotides Atu3810 and Atu3811 are separated by 153 nucleotides Atu3811 and Atu3812 are separated by 182 nucleotides
Atu3809: Atu3809 - oxidoreductase, at 905,751 to 906,617
Atu3809
Atu3810: Atu3810 - LysR family transcriptional regulator, at 906,727 to 907,620
Atu3810
Atu3811: Atu3811 - hydrolase, at 907,774 to 908,418
Atu3811
Atu3812: Atu3812 - hypothetical protein, at 908,601 to 909,008
Atu3812
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 905.734 kb on - strand at 905.734 kb on - strand at 905.746 kb on + strand at 905.766 kb on - strand at 905.768 kb on + strand at 905.776 kb on - strand at 905.981 kb on + strand, within Atu3809 at 906.007 kb on + strand, within Atu3809 at 906.019 kb on + strand, within Atu3809 at 906.069 kb on + strand, within Atu3809 at 906.082 kb on - strand, within Atu3809 at 906.115 kb on - strand, within Atu3809 at 906.360 kb on + strand, within Atu3809 at 906.425 kb on + strand, within Atu3809 at 906.425 kb on + strand, within Atu3809 at 906.471 kb on + strand, within Atu3809 at 906.479 kb on - strand, within Atu3809 at 906.537 kb on + strand at 906.545 kb on - strand at 906.545 kb on - strand at 906.592 kb on - strand at 906.613 kb on + strand at 906.621 kb on - strand at 906.669 kb on - strand at 906.723 kb on + strand at 906.738 kb on - strand at 906.781 kb on - strand at 906.792 kb on + strand at 906.860 kb on - strand, within Atu3810 at 906.871 kb on + strand, within Atu3810 at 906.892 kb on + strand, within Atu3810 at 906.892 kb on + strand, within Atu3810 at 906.900 kb on - strand, within Atu3810 at 906.906 kb on + strand, within Atu3810 at 906.916 kb on + strand, within Atu3810 at 906.916 kb on + strand, within Atu3810 at 906.934 kb on + strand, within Atu3810 at 906.980 kb on + strand, within Atu3810 at 906.988 kb on - strand, within Atu3810 at 907.005 kb on - strand, within Atu3810 at 907.041 kb on + strand, within Atu3810 at 907.092 kb on + strand, within Atu3810 at 907.100 kb on - strand, within Atu3810 at 907.107 kb on - strand, within Atu3810 at 907.207 kb on + strand, within Atu3810 at 907.250 kb on - strand, within Atu3810 at 907.311 kb on + strand, within Atu3810 at 907.425 kb on + strand, within Atu3810 at 907.433 kb on - strand, within Atu3810 at 907.450 kb on - strand, within Atu3810 at 907.452 kb on + strand, within Atu3810 at 907.452 kb on + strand, within Atu3810 at 907.644 kb on + strand at 907.730 kb on + strand at 907.838 kb on + strand at 907.869 kb on - strand, within Atu3811 at 907.953 kb on - strand, within Atu3811 at 908.006 kb on + strand, within Atu3811 at 908.037 kb on + strand, within Atu3811 at 908.045 kb on - strand, within Atu3811 at 908.103 kb on - strand, within Atu3811 at 908.120 kb on - strand, within Atu3811 at 908.120 kb on - strand, within Atu3811 at 908.165 kb on + strand, within Atu3811 at 908.165 kb on + strand, within Atu3811 at 908.172 kb on - strand, within Atu3811 at 908.172 kb on - strand, within Atu3811 at 908.213 kb on + strand, within Atu3811 at 908.257 kb on + strand, within Atu3811 at 908.314 kb on + strand, within Atu3811 at 908.319 kb on + strand, within Atu3811 at 908.322 kb on - strand, within Atu3811 at 908.375 kb on + strand at 908.415 kb on - strand at 908.506 kb on + strand at 908.554 kb on - strand at 908.568 kb on + strand at 908.578 kb on - strand at 908.584 kb on - strand at 908.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 905,734 - -0.0 905,734 - +0.1 905,746 + +2.2 905,766 - +0.2 905,768 + -0.2 905,776 - +0.5 905,981 + Atu3809 0.27 +0.5 906,007 + Atu3809 0.30 -0.5 906,019 + Atu3809 0.31 -0.3 906,069 + Atu3809 0.37 -1.0 906,082 - Atu3809 0.38 -0.1 906,115 - Atu3809 0.42 -0.1 906,360 + Atu3809 0.70 -0.1 906,425 + Atu3809 0.78 +0.7 906,425 + Atu3809 0.78 -0.2 906,471 + Atu3809 0.83 -0.3 906,479 - Atu3809 0.84 -0.3 906,537 + +0.7 906,545 - +1.5 906,545 - -0.0 906,592 - -0.9 906,613 + +0.3 906,621 - +0.2 906,669 - -0.8 906,723 + -0.1 906,738 - +0.4 906,781 - -0.7 906,792 + -0.7 906,860 - Atu3810 0.15 +0.1 906,871 + Atu3810 0.16 +0.3 906,892 + Atu3810 0.18 -0.3 906,892 + Atu3810 0.18 +0.4 906,900 - Atu3810 0.19 -1.1 906,906 + Atu3810 0.20 -0.5 906,916 + Atu3810 0.21 +0.0 906,916 + Atu3810 0.21 +0.3 906,934 + Atu3810 0.23 -0.2 906,980 + Atu3810 0.28 -0.3 906,988 - Atu3810 0.29 +0.3 907,005 - Atu3810 0.31 -0.8 907,041 + Atu3810 0.35 +0.1 907,092 + Atu3810 0.41 +0.5 907,100 - Atu3810 0.42 -1.8 907,107 - Atu3810 0.43 +3.9 907,207 + Atu3810 0.54 +0.4 907,250 - Atu3810 0.59 +0.9 907,311 + Atu3810 0.65 -0.2 907,425 + Atu3810 0.78 +0.5 907,433 - Atu3810 0.79 -0.1 907,450 - Atu3810 0.81 +0.3 907,452 + Atu3810 0.81 +0.8 907,452 + Atu3810 0.81 -0.6 907,644 + +0.1 907,730 + +0.5 907,838 + +1.7 907,869 - Atu3811 0.15 +1.7 907,953 - Atu3811 0.28 +0.7 908,006 + Atu3811 0.36 +0.5 908,037 + Atu3811 0.41 +0.8 908,045 - Atu3811 0.42 -0.6 908,103 - Atu3811 0.51 -0.8 908,120 - Atu3811 0.54 +0.3 908,120 - Atu3811 0.54 +0.2 908,165 + Atu3811 0.61 -2.3 908,165 + Atu3811 0.61 +0.3 908,172 - Atu3811 0.62 -0.8 908,172 - Atu3811 0.62 -1.2 908,213 + Atu3811 0.68 -0.3 908,257 + Atu3811 0.75 +0.1 908,314 + Atu3811 0.84 +1.9 908,319 + Atu3811 0.84 +1.1 908,322 - Atu3811 0.85 +0.3 908,375 + -1.0 908,415 - +0.2 908,506 + +0.8 908,554 - +0.8 908,568 + -0.4 908,578 - -0.1 908,584 - -1.0 908,586 + -0.7
Or see this region's nucleotide sequence