Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3314 and Atu3315 overlap by 4 nucleotides Atu3315 and Atu3316 are separated by 1 nucleotides
Atu3314: Atu3314 - cellulose synthase, at 344,599 to 346,536
Atu3314
Atu3315: Atu3315 - UDP-glucose 4-epimerase, at 346,533 to 347,516
Atu3315
Atu3316: Atu3316 - dTDP-glucose 4-6-dehydratase, at 347,518 to 348,540
Atu3316
Position (kb) 346
347
348 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 345.637 kb on + strand, within Atu3314 at 345.653 kb on - strand, within Atu3314 at 345.669 kb on + strand, within Atu3314 at 345.683 kb on + strand, within Atu3314 at 345.695 kb on + strand, within Atu3314 at 345.701 kb on + strand, within Atu3314 at 345.815 kb on + strand, within Atu3314 at 345.820 kb on + strand, within Atu3314 at 345.820 kb on + strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.889 kb on - strand, within Atu3314 at 345.940 kb on - strand, within Atu3314 at 345.968 kb on + strand, within Atu3314 at 345.992 kb on + strand, within Atu3314 at 346.090 kb on + strand, within Atu3314 at 346.091 kb on - strand, within Atu3314 at 346.100 kb on - strand, within Atu3314 at 346.100 kb on - strand, within Atu3314 at 346.102 kb on + strand, within Atu3314 at 346.160 kb on + strand, within Atu3314 at 346.160 kb on + strand, within Atu3314 at 346.185 kb on - strand, within Atu3314 at 346.188 kb on + strand, within Atu3314 at 346.196 kb on - strand, within Atu3314 at 346.197 kb on - strand, within Atu3314 at 346.228 kb on - strand, within Atu3314 at 346.237 kb on - strand, within Atu3314 at 346.265 kb on + strand, within Atu3314 at 346.302 kb on + strand, within Atu3314 at 346.313 kb on + strand, within Atu3314 at 346.321 kb on - strand, within Atu3314 at 346.403 kb on - strand at 346.404 kb on - strand at 346.539 kb on - strand at 346.625 kb on - strand at 346.625 kb on - strand at 346.630 kb on + strand at 346.632 kb on + strand, within Atu3315 at 346.829 kb on + strand, within Atu3315 at 346.950 kb on + strand, within Atu3315 at 346.950 kb on + strand, within Atu3315 at 347.055 kb on - strand, within Atu3315 at 347.098 kb on - strand, within Atu3315 at 347.195 kb on + strand, within Atu3315 at 347.286 kb on - strand, within Atu3315 at 347.308 kb on - strand, within Atu3315 at 347.466 kb on - strand at 347.519 kb on + strand at 347.665 kb on + strand, within Atu3316 at 347.783 kb on - strand, within Atu3316 at 347.795 kb on - strand, within Atu3316 at 347.949 kb on + strand, within Atu3316 at 347.949 kb on + strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 347.957 kb on - strand, within Atu3316 at 348.001 kb on - strand, within Atu3316 at 348.144 kb on + strand, within Atu3316 at 348.152 kb on - strand, within Atu3316 at 348.213 kb on - strand, within Atu3316 at 348.238 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.289 kb on + strand, within Atu3316 at 348.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 345,637 + Atu3314 0.54 -0.1 345,653 - Atu3314 0.54 +1.0 345,669 + Atu3314 0.55 +0.4 345,683 + Atu3314 0.56 +0.2 345,695 + Atu3314 0.57 -1.4 345,701 + Atu3314 0.57 +0.8 345,815 + Atu3314 0.63 +0.0 345,820 + Atu3314 0.63 +0.0 345,820 + Atu3314 0.63 +0.3 345,828 - Atu3314 0.63 +0.3 345,828 - Atu3314 0.63 +2.5 345,828 - Atu3314 0.63 -0.1 345,828 - Atu3314 0.63 +1.3 345,889 - Atu3314 0.67 -0.5 345,940 - Atu3314 0.69 -0.4 345,968 + Atu3314 0.71 +0.0 345,992 + Atu3314 0.72 +0.1 346,090 + Atu3314 0.77 +0.4 346,091 - Atu3314 0.77 -0.1 346,100 - Atu3314 0.77 +1.3 346,100 - Atu3314 0.77 +0.8 346,102 + Atu3314 0.78 -0.9 346,160 + Atu3314 0.81 +1.0 346,160 + Atu3314 0.81 -1.1 346,185 - Atu3314 0.82 +0.4 346,188 + Atu3314 0.82 +0.7 346,196 - Atu3314 0.82 +1.6 346,197 - Atu3314 0.82 -0.2 346,228 - Atu3314 0.84 -0.1 346,237 - Atu3314 0.85 +0.4 346,265 + Atu3314 0.86 -0.5 346,302 + Atu3314 0.88 -0.3 346,313 + Atu3314 0.88 -0.6 346,321 - Atu3314 0.89 -0.0 346,403 - -0.4 346,404 - +1.9 346,539 - -0.6 346,625 - -0.4 346,625 - -3.1 346,630 + +0.2 346,632 + Atu3315 0.10 +1.5 346,829 + Atu3315 0.30 +2.8 346,950 + Atu3315 0.42 -0.6 346,950 + Atu3315 0.42 +0.6 347,055 - Atu3315 0.53 +1.6 347,098 - Atu3315 0.57 +0.2 347,195 + Atu3315 0.67 -2.1 347,286 - Atu3315 0.77 +1.5 347,308 - Atu3315 0.79 +0.6 347,466 - -0.3 347,519 + -0.8 347,665 + Atu3316 0.14 +0.0 347,783 - Atu3316 0.26 -0.4 347,795 - Atu3316 0.27 -0.8 347,949 + Atu3316 0.42 +0.3 347,949 + Atu3316 0.42 -0.6 347,957 - Atu3316 0.43 +0.0 347,957 - Atu3316 0.43 -1.6 348,001 - Atu3316 0.47 +0.6 348,144 + Atu3316 0.61 +1.5 348,152 - Atu3316 0.62 +0.2 348,213 - Atu3316 0.68 +1.6 348,238 + Atu3316 0.70 +0.2 348,289 + Atu3316 0.75 +0.1 348,289 + Atu3316 0.75 +0.1 348,499 - -0.6
Or see this region's nucleotide sequence