Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3276 and Atu3277 are separated by 173 nucleotides Atu3277 and Atu3278 overlap by 1 nucleotides Atu3278 and Atu3279 overlap by 1 nucleotides
Atu3276: Atu3276 - hypothetical protein, at 298,306 to 302,331
Atu3276
Atu3277: Atu3277 - nitrilotriacetate monooxygenase, at 302,505 to 303,029
Atu3277
Atu3278: Atu3278 - aryl-alcohol dehydrogenase, at 303,029 to 303,922
Atu3278
Atu3279: Atu3279 - methanesulfonate sulfonatase, at 303,922 to 305,079
Atu3279
Position (kb) 303
304 Strain fitness (log2 ratio) -2
-1
0
1 at 302.032 kb on - strand at 302.092 kb on - strand at 302.102 kb on - strand at 302.104 kb on + strand at 302.112 kb on - strand at 302.114 kb on + strand at 302.114 kb on + strand at 302.122 kb on - strand at 302.122 kb on - strand at 302.122 kb on - strand at 302.234 kb on + strand at 302.242 kb on + strand at 302.250 kb on - strand at 302.300 kb on - strand at 302.442 kb on - strand at 302.447 kb on + strand at 302.488 kb on + strand at 302.503 kb on + strand at 302.503 kb on + strand at 302.511 kb on - strand at 302.511 kb on - strand at 302.582 kb on - strand, within Atu3277 at 302.591 kb on + strand, within Atu3277 at 302.612 kb on + strand, within Atu3277 at 302.668 kb on - strand, within Atu3277 at 302.807 kb on + strand, within Atu3277 at 302.926 kb on - strand, within Atu3277 at 302.935 kb on + strand, within Atu3277 at 303.064 kb on + strand at 303.064 kb on - strand at 303.064 kb on - strand at 303.081 kb on - strand at 303.122 kb on - strand, within Atu3278 at 303.183 kb on - strand, within Atu3278 at 303.214 kb on + strand, within Atu3278 at 303.261 kb on + strand, within Atu3278 at 303.261 kb on + strand, within Atu3278 at 303.296 kb on + strand, within Atu3278 at 303.304 kb on - strand, within Atu3278 at 303.401 kb on + strand, within Atu3278 at 303.443 kb on - strand, within Atu3278 at 303.459 kb on + strand, within Atu3278 at 303.459 kb on + strand, within Atu3278 at 303.459 kb on + strand, within Atu3278 at 303.467 kb on - strand, within Atu3278 at 303.467 kb on - strand, within Atu3278 at 303.467 kb on - strand, within Atu3278 at 303.508 kb on + strand, within Atu3278 at 303.602 kb on + strand, within Atu3278 at 303.605 kb on - strand, within Atu3278 at 303.629 kb on - strand, within Atu3278 at 303.642 kb on + strand, within Atu3278 at 303.655 kb on - strand, within Atu3278 at 303.718 kb on + strand, within Atu3278 at 303.740 kb on + strand, within Atu3278 at 303.749 kb on + strand, within Atu3278 at 303.775 kb on + strand, within Atu3278 at 303.775 kb on + strand, within Atu3278 at 303.783 kb on - strand, within Atu3278 at 303.794 kb on - strand, within Atu3278 at 303.807 kb on + strand, within Atu3278 at 303.877 kb on + strand at 304.125 kb on - strand, within Atu3279 at 304.148 kb on - strand, within Atu3279 at 304.312 kb on - strand, within Atu3279 at 304.380 kb on - strand, within Atu3279 at 304.385 kb on - strand, within Atu3279 at 304.591 kb on - strand, within Atu3279 at 304.591 kb on - strand, within Atu3279 at 304.619 kb on - strand, within Atu3279 at 304.656 kb on + strand, within Atu3279 at 304.685 kb on - strand, within Atu3279 at 304.842 kb on + strand, within Atu3279 at 304.850 kb on - strand, within Atu3279 at 304.903 kb on - strand, within Atu3279
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 302,032 - +1.3 302,092 - -0.7 302,102 - -0.3 302,104 + -0.5 302,112 - +0.8 302,114 + -0.2 302,114 + -0.6 302,122 - +0.3 302,122 - +0.6 302,122 - -0.2 302,234 + -0.3 302,242 + +0.2 302,250 - -0.3 302,300 - -0.3 302,442 - +0.1 302,447 + +0.5 302,488 + +0.7 302,503 + +1.2 302,503 + +0.8 302,511 - +0.2 302,511 - -0.5 302,582 - Atu3277 0.15 -1.6 302,591 + Atu3277 0.16 -0.4 302,612 + Atu3277 0.20 -0.7 302,668 - Atu3277 0.31 -0.2 302,807 + Atu3277 0.58 -0.3 302,926 - Atu3277 0.80 -0.3 302,935 + Atu3277 0.82 -1.0 303,064 + -0.7 303,064 - -1.6 303,064 - -0.7 303,081 - +0.5 303,122 - Atu3278 0.10 -0.2 303,183 - Atu3278 0.17 -0.8 303,214 + Atu3278 0.21 -0.7 303,261 + Atu3278 0.26 +0.3 303,261 + Atu3278 0.26 +0.5 303,296 + Atu3278 0.30 -1.8 303,304 - Atu3278 0.31 +0.9 303,401 + Atu3278 0.42 +0.2 303,443 - Atu3278 0.46 -1.2 303,459 + Atu3278 0.48 +1.2 303,459 + Atu3278 0.48 +0.8 303,459 + Atu3278 0.48 -0.3 303,467 - Atu3278 0.49 +0.7 303,467 - Atu3278 0.49 -1.3 303,467 - Atu3278 0.49 -0.8 303,508 + Atu3278 0.54 +0.5 303,602 + Atu3278 0.64 +1.0 303,605 - Atu3278 0.64 +0.9 303,629 - Atu3278 0.67 +1.3 303,642 + Atu3278 0.69 -0.5 303,655 - Atu3278 0.70 +0.2 303,718 + Atu3278 0.77 +1.0 303,740 + Atu3278 0.80 -0.2 303,749 + Atu3278 0.81 +0.6 303,775 + Atu3278 0.83 -0.0 303,775 + Atu3278 0.83 -1.6 303,783 - Atu3278 0.84 -0.4 303,794 - Atu3278 0.86 -0.2 303,807 + Atu3278 0.87 -1.0 303,877 + +0.4 304,125 - Atu3279 0.18 -0.0 304,148 - Atu3279 0.20 -1.9 304,312 - Atu3279 0.34 -1.5 304,380 - Atu3279 0.40 -0.2 304,385 - Atu3279 0.40 -1.0 304,591 - Atu3279 0.58 -1.1 304,591 - Atu3279 0.58 -1.3 304,619 - Atu3279 0.60 -0.4 304,656 + Atu3279 0.63 -0.6 304,685 - Atu3279 0.66 -1.3 304,842 + Atu3279 0.79 +0.4 304,850 - Atu3279 0.80 -1.3 304,903 - Atu3279 0.85 -1.4
Or see this region's nucleotide sequence