Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3130 and Atu3131 are separated by 43 nucleotides Atu3131 and Atu3132 are separated by 2 nucleotides Atu3132 and Atu3133 are separated by 4 nucleotides
Atu3130: Atu3130 - sugar ABC transporter substrate-binding protein, at 137,759 to 139,027
Atu3130
Atu3131: Atu3131 - sugar ABC transporter ATPase, at 139,071 to 140,171
Atu3131
Atu3132: Atu3132 - sugar ABC transporter permease, at 140,174 to 141,058
Atu3132
Atu3133: Atu3133 - sugar ABC transporter permease, at 141,063 to 141,944
Atu3133
Position (kb) 139
140
141 Strain fitness (log2 ratio) -2
-1
0
1
2 at 138.081 kb on - strand, within Atu3130 at 138.253 kb on + strand, within Atu3130 at 138.261 kb on - strand, within Atu3130 at 138.338 kb on - strand, within Atu3130 at 138.368 kb on - strand, within Atu3130 at 138.488 kb on + strand, within Atu3130 at 138.493 kb on - strand, within Atu3130 at 138.642 kb on + strand, within Atu3130 at 138.720 kb on - strand, within Atu3130 at 138.853 kb on - strand, within Atu3130 at 138.938 kb on + strand at 139.306 kb on - strand, within Atu3131 at 139.358 kb on + strand, within Atu3131 at 139.386 kb on + strand, within Atu3131 at 139.406 kb on - strand, within Atu3131 at 139.462 kb on + strand, within Atu3131 at 139.512 kb on - strand, within Atu3131 at 139.583 kb on - strand, within Atu3131 at 139.634 kb on + strand, within Atu3131 at 139.692 kb on - strand, within Atu3131 at 139.734 kb on + strand, within Atu3131 at 139.734 kb on + strand, within Atu3131 at 139.762 kb on + strand, within Atu3131 at 139.997 kb on - strand, within Atu3131 at 140.017 kb on - strand, within Atu3131 at 140.052 kb on + strand, within Atu3131 at 140.067 kb on - strand at 140.116 kb on + strand at 140.116 kb on + strand at 140.116 kb on + strand at 140.131 kb on + strand at 140.237 kb on + strand at 140.302 kb on - strand, within Atu3132 at 140.357 kb on - strand, within Atu3132 at 140.423 kb on - strand, within Atu3132 at 140.451 kb on + strand, within Atu3132 at 140.482 kb on - strand, within Atu3132 at 140.580 kb on + strand, within Atu3132 at 140.616 kb on - strand, within Atu3132 at 140.638 kb on - strand, within Atu3132 at 140.680 kb on - strand, within Atu3132 at 140.734 kb on - strand, within Atu3132 at 140.734 kb on - strand, within Atu3132 at 140.747 kb on + strand, within Atu3132 at 140.850 kb on - strand, within Atu3132 at 140.928 kb on + strand, within Atu3132 at 140.950 kb on + strand, within Atu3132 at 140.986 kb on - strand at 140.988 kb on + strand at 141.001 kb on + strand at 141.035 kb on + strand at 141.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 138,081 - Atu3130 0.25 +0.6 138,253 + Atu3130 0.39 -0.2 138,261 - Atu3130 0.40 +0.1 138,338 - Atu3130 0.46 +0.2 138,368 - Atu3130 0.48 -0.1 138,488 + Atu3130 0.57 +0.2 138,493 - Atu3130 0.58 +1.4 138,642 + Atu3130 0.70 +1.9 138,720 - Atu3130 0.76 +0.2 138,853 - Atu3130 0.86 +0.9 138,938 + -0.9 139,306 - Atu3131 0.21 -0.1 139,358 + Atu3131 0.26 -0.2 139,386 + Atu3131 0.29 -0.1 139,406 - Atu3131 0.30 -2.0 139,462 + Atu3131 0.36 -0.3 139,512 - Atu3131 0.40 +0.2 139,583 - Atu3131 0.47 +0.1 139,634 + Atu3131 0.51 -0.1 139,692 - Atu3131 0.56 +0.1 139,734 + Atu3131 0.60 -0.2 139,734 + Atu3131 0.60 -0.3 139,762 + Atu3131 0.63 -0.0 139,997 - Atu3131 0.84 +1.2 140,017 - Atu3131 0.86 -1.5 140,052 + Atu3131 0.89 -0.1 140,067 - -0.1 140,116 + -0.8 140,116 + -0.0 140,116 + -0.2 140,131 + -0.5 140,237 + +0.4 140,302 - Atu3132 0.14 -0.4 140,357 - Atu3132 0.21 -1.8 140,423 - Atu3132 0.28 +1.2 140,451 + Atu3132 0.31 +0.0 140,482 - Atu3132 0.35 +0.1 140,580 + Atu3132 0.46 -0.0 140,616 - Atu3132 0.50 -0.6 140,638 - Atu3132 0.52 +0.3 140,680 - Atu3132 0.57 -0.4 140,734 - Atu3132 0.63 +0.8 140,734 - Atu3132 0.63 +0.1 140,747 + Atu3132 0.65 -1.7 140,850 - Atu3132 0.76 +0.1 140,928 + Atu3132 0.85 -1.1 140,950 + Atu3132 0.88 -2.1 140,986 - +0.6 140,988 + +0.2 141,001 + +0.7 141,035 + -0.4 141,069 - -1.7
Or see this region's nucleotide sequence