Strain Fitness in Escherichia coli BW25113 around b2683
Experiment: Nalidixic 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Nalidixic 0.006 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,807,604 | + | -1.3 | |||
2,807,646 | + | +0.2 | |||
2,807,646 | + | -0.1 | |||
2,807,853 | - | ygaZ | b2682 | 0.29 | +1.0 |
2,807,917 | - | ygaZ | b2682 | 0.38 | -0.2 |
2,807,917 | - | ygaZ | b2682 | 0.38 | +0.5 |
2,807,919 | - | ygaZ | b2682 | 0.38 | +0.6 |
2,808,115 | - | ygaZ | b2682 | 0.64 | +0.9 |
2,808,115 | - | ygaZ | b2682 | 0.64 | -0.3 |
2,808,190 | + | ygaZ | b2682 | 0.75 | +2.5 |
2,808,190 | + | ygaZ | b2682 | 0.75 | +0.5 |
2,808,198 | - | ygaZ | b2682 | 0.76 | -1.1 |
2,808,322 | - | +0.1 | |||
2,808,322 | - | +1.0 | |||
2,808,379 | - | +0.6 | |||
2,808,379 | - | +0.0 | |||
2,808,399 | - | +0.9 | |||
2,808,515 | + | ygaH | b2683 | 0.44 | +1.7 |
2,808,517 | - | ygaH | b2683 | 0.45 | -1.9 |
2,808,533 | + | ygaH | b2683 | 0.50 | +0.8 |
2,808,533 | + | ygaH | b2683 | 0.50 | +3.2 |
2,808,534 | - | ygaH | b2683 | 0.50 | +1.1 |
2,808,534 | - | ygaH | b2683 | 0.50 | +0.6 |
2,808,560 | - | ygaH | b2683 | 0.58 | +0.3 |
2,808,565 | - | +1.9 | |||
2,808,645 | + | ygaH | b2683 | 0.83 | +4.8 |
2,808,645 | + | ygaH | b2683 | 0.83 | +5.4 |
2,808,645 | + | ygaH | b2683 | 0.83 | +6.0 |
2,808,648 | - | ygaH | b2683 | 0.84 | -0.4 |
2,808,655 | + | ygaH | b2683 | 0.86 | +3.4 |
2,808,658 | - | ygaH | b2683 | 0.87 | +0.0 |
2,808,660 | - | ygaH | b2683 | 0.88 | +0.9 |
2,808,662 | + | ygaH | b2683 | 0.88 | +2.8 |
2,808,662 | + | ygaH | b2683 | 0.88 | +3.5 |
2,808,671 | - | +0.4 | |||
2,808,876 | - | mprA | b2684 | 0.16 | -1.7 |
2,809,004 | - | mprA | b2684 | 0.40 | -2.3 |
2,809,100 | + | mprA | b2684 | 0.58 | +10.2 |
2,809,100 | + | mprA | b2684 | 0.58 | +10.3 |
2,809,107 | + | mprA | b2684 | 0.59 | +9.7 |
2,809,200 | + | mprA | b2684 | 0.77 | +9.9 |
2,809,287 | + | +8.4 | |||
2,809,433 | - | +0.7 | |||
2,809,497 | + | -2.2 | |||
2,809,497 | + | -1.5 | |||
2,809,546 | - | -1.9 | |||
2,809,548 | - | -2.6 |
Or see this region's nucleotide sequence