Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF475 and GFF476 are separated by 156 nucleotides GFF476 and GFF477 are separated by 9 nucleotides GFF477 and GFF478 are separated by 10 nucleotides
GFF475 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 197,076 to 198,656
GFF475
GFF476 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 198,813 to 199,832
GFF476
GFF477 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 199,842 to 200,744
GFF477
GFF478 - Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2), at 200,755 to 201,738
GFF478
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1 at 197.928 kb on + strand, within GFF475 at 197.937 kb on + strand, within GFF475 at 197.937 kb on + strand, within GFF475 at 197.938 kb on - strand, within GFF475 at 197.938 kb on - strand, within GFF475 at 197.940 kb on - strand, within GFF475 at 197.940 kb on - strand, within GFF475 at 197.991 kb on + strand, within GFF475 at 198.081 kb on + strand, within GFF475 at 198.092 kb on + strand, within GFF475 at 198.202 kb on - strand, within GFF475 at 198.221 kb on + strand, within GFF475 at 198.282 kb on + strand, within GFF475 at 198.282 kb on + strand, within GFF475 at 198.282 kb on + strand, within GFF475 at 198.438 kb on + strand, within GFF475 at 198.438 kb on + strand, within GFF475 at 198.439 kb on - strand, within GFF475 at 198.440 kb on + strand, within GFF475 at 198.441 kb on - strand, within GFF475 at 198.441 kb on - strand, within GFF475 at 198.508 kb on - strand at 198.750 kb on - strand at 198.750 kb on - strand at 198.980 kb on - strand, within GFF476 at 199.009 kb on - strand, within GFF476 at 199.020 kb on - strand, within GFF476 at 199.020 kb on - strand, within GFF476 at 199.045 kb on + strand, within GFF476 at 199.100 kb on + strand, within GFF476 at 199.239 kb on - strand, within GFF476 at 199.239 kb on - strand, within GFF476 at 199.239 kb on - strand, within GFF476 at 199.239 kb on - strand, within GFF476 at 199.239 kb on - strand, within GFF476 at 199.239 kb on - strand, within GFF476 at 199.407 kb on - strand, within GFF476 at 199.424 kb on + strand, within GFF476 at 199.424 kb on + strand, within GFF476 at 199.425 kb on - strand, within GFF476 at 199.518 kb on + strand, within GFF476 at 199.519 kb on - strand, within GFF476 at 199.662 kb on - strand, within GFF476 at 199.783 kb on + strand at 199.795 kb on - strand at 199.929 kb on - strand at 199.929 kb on - strand at 199.954 kb on - strand, within GFF477 at 200.005 kb on - strand, within GFF477 at 200.127 kb on + strand, within GFF477 at 200.261 kb on + strand, within GFF477 at 200.262 kb on - strand, within GFF477 at 200.262 kb on - strand, within GFF477 at 200.743 kb on - strand at 200.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 197,928 + GFF475 0.54 -0.3 197,937 + GFF475 0.54 +0.2 197,937 + GFF475 0.54 +0.1 197,938 - GFF475 0.55 +0.1 197,938 - GFF475 0.55 +0.3 197,940 - GFF475 0.55 -1.0 197,940 - GFF475 0.55 +0.4 197,991 + GFF475 0.58 -0.1 198,081 + GFF475 0.64 +0.1 198,092 + GFF475 0.64 +0.0 198,202 - GFF475 0.71 +0.9 198,221 + GFF475 0.72 -0.7 198,282 + GFF475 0.76 -0.2 198,282 + GFF475 0.76 +0.2 198,282 + GFF475 0.76 -0.6 198,438 + GFF475 0.86 +0.6 198,438 + GFF475 0.86 -0.2 198,439 - GFF475 0.86 +0.1 198,440 + GFF475 0.86 +0.6 198,441 - GFF475 0.86 +1.0 198,441 - GFF475 0.86 +0.2 198,508 - +0.4 198,750 - +1.2 198,750 - -0.8 198,980 - GFF476 0.16 +0.0 199,009 - GFF476 0.19 +0.2 199,020 - GFF476 0.20 -0.4 199,020 - GFF476 0.20 +0.7 199,045 + GFF476 0.23 +0.2 199,100 + GFF476 0.28 +0.1 199,239 - GFF476 0.42 +0.8 199,239 - GFF476 0.42 -1.0 199,239 - GFF476 0.42 +0.2 199,239 - GFF476 0.42 +0.3 199,239 - GFF476 0.42 -0.2 199,239 - GFF476 0.42 -0.4 199,407 - GFF476 0.58 +0.5 199,424 + GFF476 0.60 -1.8 199,424 + GFF476 0.60 +0.4 199,425 - GFF476 0.60 -0.2 199,518 + GFF476 0.69 +0.2 199,519 - GFF476 0.69 +0.1 199,662 - GFF476 0.83 +0.5 199,783 + -0.2 199,795 - -0.1 199,929 - +0.8 199,929 - +0.4 199,954 - GFF477 0.12 -0.6 200,005 - GFF477 0.18 +0.8 200,127 + GFF477 0.32 +0.4 200,261 + GFF477 0.46 +0.1 200,262 - GFF477 0.47 -0.0 200,262 - GFF477 0.47 -0.1 200,743 - +0.8 200,765 + +0.3
Or see this region's nucleotide sequence