Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4339

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4338 and GFF4339 are separated by 227 nucleotidesGFF4339 and GFF4340 are separated by 174 nucleotides GFF4338 - Putative transport protein, at 118,567 to 119,931 GFF4338 GFF4339 - hypothetical protein, at 120,159 to 120,293 GFF4339 GFF4340 - corresponds to STY0478 from Accession AL513382: Salmonella typhi CT18, at 120,468 to 121,979 GFF4340 Position (kb) 120 121Strain fitness (log2 ratio) -2 -1 0 1at 119.252 kb on - strand, within GFF4338at 119.268 kb on + strand, within GFF4338at 119.269 kb on - strand, within GFF4338at 119.269 kb on - strand, within GFF4338at 119.314 kb on - strand, within GFF4338at 119.452 kb on - strand, within GFF4338at 119.473 kb on + strand, within GFF4338at 119.496 kb on + strand, within GFF4338at 119.819 kb on + strandat 119.820 kb on - strandat 119.820 kb on - strandat 119.820 kb on - strandat 119.836 kb on + strandat 119.881 kb on + strandat 120.123 kb on - strandat 120.147 kb on - strandat 120.148 kb on + strandat 120.149 kb on - strandat 120.559 kb on + strandat 120.694 kb on - strand, within GFF4340at 120.696 kb on + strand, within GFF4340at 120.697 kb on - strand, within GFF4340at 120.697 kb on - strand, within GFF4340at 120.737 kb on + strand, within GFF4340at 120.801 kb on + strand, within GFF4340at 121.027 kb on + strand, within GFF4340

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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119,252 - GFF4338 0.50 -2.3
119,268 + GFF4338 0.51 -0.4
119,269 - GFF4338 0.51 +0.4
119,269 - GFF4338 0.51 +0.2
119,314 - GFF4338 0.55 -0.1
119,452 - GFF4338 0.65 +0.6
119,473 + GFF4338 0.66 -1.3
119,496 + GFF4338 0.68 -0.6
119,819 + +0.1
119,820 - +0.7
119,820 - +0.3
119,820 - +0.0
119,836 + +0.3
119,881 + -0.3
120,123 - -0.4
120,147 - +0.7
120,148 + +0.6
120,149 - -0.0
120,559 + +0.1
120,694 - GFF4340 0.15 +0.2
120,696 + GFF4340 0.15 +0.2
120,697 - GFF4340 0.15 +0.3
120,697 - GFF4340 0.15 +0.1
120,737 + GFF4340 0.18 +1.7
120,801 + GFF4340 0.22 +0.0
121,027 + GFF4340 0.37 +0.2

Or see this region's nucleotide sequence