Experiment: 6F2_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4246 and GFF4247 overlap by 4 nucleotides GFF4247 and GFF4248 are separated by 276 nucleotides
GFF4246 - RND efflux system, inner membrane transporter CmeB, at 24,105 to 27,272
GFF4246
GFF4247 - RND efflux system, membrane fusion protein CmeA, at 27,269 to 28,495
GFF4247
GFF4248 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 28,772 to 31,060
GFF4248
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1
2 at 26.427 kb on + strand, within GFF4246 at 26.439 kb on + strand, within GFF4246 at 26.441 kb on + strand, within GFF4246 at 26.443 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.801 kb on + strand, within GFF4246 at 26.810 kb on - strand, within GFF4246 at 27.036 kb on - strand at 27.036 kb on - strand at 27.037 kb on + strand at 27.484 kb on - strand, within GFF4247 at 27.519 kb on + strand, within GFF4247 at 27.705 kb on - strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.829 kb on - strand, within GFF4247 at 27.851 kb on - strand, within GFF4247 at 27.914 kb on + strand, within GFF4247 at 27.950 kb on - strand, within GFF4247 at 28.125 kb on - strand, within GFF4247 at 28.139 kb on + strand, within GFF4247 at 28.140 kb on - strand, within GFF4247 at 28.330 kb on + strand, within GFF4247 at 28.346 kb on - strand, within GFF4247 at 28.413 kb on - strand at 28.432 kb on - strand at 28.475 kb on - strand at 28.489 kb on + strand at 28.489 kb on + strand at 28.490 kb on - strand at 28.636 kb on + strand at 28.751 kb on - strand at 28.809 kb on + strand at 28.810 kb on - strand at 28.810 kb on - strand at 28.813 kb on + strand at 28.822 kb on + strand at 28.822 kb on + strand at 28.979 kb on - strand at 28.992 kb on + strand at 29.125 kb on + strand, within GFF4248 at 29.135 kb on - strand, within GFF4248 at 29.376 kb on - strand, within GFF4248 at 29.378 kb on + strand, within GFF4248 at 29.465 kb on - strand, within GFF4248
Per-strain Table
Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI remove 26,427 + GFF4246 0.73 +0.6 26,439 + GFF4246 0.74 +0.2 26,441 + GFF4246 0.74 +0.0 26,443 + GFF4246 0.74 -0.8 26,628 + GFF4246 0.80 -0.7 26,628 + GFF4246 0.80 -0.6 26,628 + GFF4246 0.80 +0.3 26,628 + GFF4246 0.80 -1.7 26,801 + GFF4246 0.85 -0.6 26,810 - GFF4246 0.85 -0.3 27,036 - -1.2 27,036 - -0.9 27,037 + +0.6 27,484 - GFF4247 0.18 -0.0 27,519 + GFF4247 0.20 -0.5 27,705 - GFF4247 0.36 -0.5 27,828 + GFF4247 0.46 +0.2 27,828 + GFF4247 0.46 -0.1 27,828 + GFF4247 0.46 -0.5 27,828 + GFF4247 0.46 -0.6 27,829 - GFF4247 0.46 +2.1 27,851 - GFF4247 0.47 -0.9 27,914 + GFF4247 0.53 +0.5 27,950 - GFF4247 0.56 +0.4 28,125 - GFF4247 0.70 -1.0 28,139 + GFF4247 0.71 -0.9 28,140 - GFF4247 0.71 -0.1 28,330 + GFF4247 0.86 +0.1 28,346 - GFF4247 0.88 -0.7 28,413 - -0.1 28,432 - -0.1 28,475 - +0.2 28,489 + +0.1 28,489 + -0.0 28,490 - +0.3 28,636 + +0.1 28,751 - +0.1 28,809 + +0.1 28,810 - -0.5 28,810 - -0.9 28,813 + +0.3 28,822 + -1.5 28,822 + +0.9 28,979 - +0.1 28,992 + -0.2 29,125 + GFF4248 0.15 +0.1 29,135 - GFF4248 0.16 +0.3 29,376 - GFF4248 0.26 -0.9 29,378 + GFF4248 0.26 -0.5 29,465 - GFF4248 0.30 +1.0
Or see this region's nucleotide sequence