Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3805

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3804 and GFF3805 are separated by 70 nucleotidesGFF3805 and GFF3806 are separated by 2 nucleotidesGFF3806 and GFF3807 are separated by 50 nucleotides GFF3804 - tRNA-dihydrouridine synthase C (EC 1.-.-.-), at 73,133 to 74,128 GFF3804 GFF3805 - FIG01045646: hypothetical protein, at 74,199 to 74,396 GFF3805 GFF3806 - FIG01045848: hypothetical protein, at 74,399 to 74,536 GFF3806 GFF3807 - RND efflux system, outer membrane lipoprotein, NodT family, at 74,587 to 76,023 GFF3807 Position (kb) 74 75Strain fitness (log2 ratio) -1 0 1at 73.730 kb on - strand, within GFF3804at 73.826 kb on - strand, within GFF3804at 73.826 kb on - strand, within GFF3804at 73.905 kb on - strand, within GFF3804at 73.918 kb on + strand, within GFF3804at 73.945 kb on - strand, within GFF3804at 73.947 kb on + strand, within GFF3804at 73.948 kb on - strand, within GFF3804at 73.956 kb on - strand, within GFF3804at 73.957 kb on + strand, within GFF3804at 73.992 kb on - strand, within GFF3804at 74.009 kb on - strand, within GFF3804at 74.028 kb on + strand, within GFF3804at 74.029 kb on - strandat 74.134 kb on - strandat 74.162 kb on + strandat 74.163 kb on - strandat 74.163 kb on - strandat 74.163 kb on - strandat 74.163 kb on - strandat 75.004 kb on + strand, within GFF3807at 75.005 kb on - strand, within GFF3807at 75.005 kb on - strand, within GFF3807at 75.006 kb on + strand, within GFF3807at 75.015 kb on + strand, within GFF3807at 75.051 kb on - strand, within GFF3807at 75.051 kb on - strand, within GFF3807at 75.267 kb on + strand, within GFF3807at 75.268 kb on - strand, within GFF3807

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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73,730 - GFF3804 0.60 +0.2
73,826 - GFF3804 0.70 +0.1
73,826 - GFF3804 0.70 -0.6
73,905 - GFF3804 0.78 +0.1
73,918 + GFF3804 0.79 -0.1
73,945 - GFF3804 0.82 +0.1
73,947 + GFF3804 0.82 +0.8
73,948 - GFF3804 0.82 -0.6
73,956 - GFF3804 0.83 -0.6
73,957 + GFF3804 0.83 +0.1
73,992 - GFF3804 0.86 -0.4
74,009 - GFF3804 0.88 -0.6
74,028 + GFF3804 0.90 -0.7
74,029 - -0.5
74,134 - -1.0
74,162 + +0.4
74,163 - +0.9
74,163 - -0.1
74,163 - -0.1
74,163 - -0.2
75,004 + GFF3807 0.29 +0.1
75,005 - GFF3807 0.29 -1.2
75,005 - GFF3807 0.29 -0.8
75,006 + GFF3807 0.29 +1.1
75,015 + GFF3807 0.30 +0.2
75,051 - GFF3807 0.32 +0.8
75,051 - GFF3807 0.32 -0.1
75,267 + GFF3807 0.47 -1.3
75,268 - GFF3807 0.47 +1.1

Or see this region's nucleotide sequence