Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2163

Experiment: 6F2_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2161 and GFF2162 are separated by 222 nucleotidesGFF2162 and GFF2163 are separated by 333 nucleotidesGFF2163 and GFF2164 are separated by 364 nucleotides GFF2161 - GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2), at 7,002 to 8,579 GFF2161 GFF2162 - Mobile element protein, at 8,802 to 9,092 GFF2162 GFF2163 - FIG01047222: hypothetical protein, at 9,426 to 9,617 GFF2163 GFF2164 - Putative inner membrane protein, at 9,982 to 10,125 GFF2164 Position (kb) 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1at 8.441 kb on + strandat 8.739 kb on + strandat 8.739 kb on + strandat 8.740 kb on - strandat 8.740 kb on - strandat 8.813 kb on + strandat 9.267 kb on - strandat 9.288 kb on + strandat 9.444 kb on - strandat 9.485 kb on + strand, within GFF2163at 9.486 kb on - strand, within GFF2163at 9.586 kb on - strand, within GFF2163at 9.648 kb on - strandat 9.650 kb on - strandat 9.671 kb on - strandat 9.671 kb on - strandat 9.674 kb on + strandat 9.674 kb on + strandat 9.675 kb on - strandat 9.684 kb on + strandat 9.722 kb on + strandat 9.726 kb on + strandat 9.882 kb on + strandat 9.984 kb on - strandat 10.238 kb on - strandat 10.319 kb on - strandat 10.344 kb on - strandat 10.503 kb on + strandat 10.586 kb on - strandat 10.608 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6F2_phage 15 MOI
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8,441 + -0.7
8,739 + +0.1
8,739 + +0.1
8,740 - -0.7
8,740 - +0.0
8,813 + +0.3
9,267 - -0.3
9,288 + -0.6
9,444 - +0.4
9,485 + GFF2163 0.31 +1.1
9,486 - GFF2163 0.31 +0.1
9,586 - GFF2163 0.83 +1.2
9,648 - -0.1
9,650 - +0.4
9,671 - +0.6
9,671 - -0.4
9,674 + +0.1
9,674 + +0.5
9,675 - -1.5
9,684 + +0.3
9,722 + -0.5
9,726 + -0.8
9,882 + +0.1
9,984 - -0.7
10,238 - -0.5
10,319 - -0.1
10,344 - +0.5
10,503 + +0.0
10,586 - -2.8
10,608 + -0.1

Or see this region's nucleotide sequence