Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0979 and Atu8143 are separated by 162 nucleotides Atu8143 and Atu0981 are separated by 218 nucleotides
Atu0979: Atu0979 - two component sensor kinase, at 968,713 to 970,122
Atu0979
Atu8143: Atu8143 - hypothetical protein, at 970,285 to 971,145
Atu8143
Atu0981: Atu0981 - glutamate-ammonia-ligase adenylyltransferase, at 971,364 to 974,330
Atu0981
Position (kb) 970
971
972 Strain fitness (log2 ratio) -2
-1
0
1 at 969.390 kb on + strand, within Atu0979 at 969.465 kb on + strand, within Atu0979 at 969.466 kb on - strand, within Atu0979 at 969.490 kb on - strand, within Atu0979 at 969.587 kb on + strand, within Atu0979 at 969.590 kb on + strand, within Atu0979 at 969.600 kb on + strand, within Atu0979 at 969.623 kb on - strand, within Atu0979 at 969.784 kb on + strand, within Atu0979 at 969.829 kb on + strand, within Atu0979 at 969.869 kb on - strand, within Atu0979 at 969.896 kb on - strand, within Atu0979 at 970.076 kb on + strand at 970.076 kb on + strand at 970.076 kb on + strand at 970.076 kb on + strand at 970.084 kb on - strand at 970.084 kb on - strand at 970.137 kb on - strand at 970.155 kb on - strand at 970.188 kb on + strand at 970.203 kb on + strand at 970.221 kb on - strand at 970.227 kb on + strand at 970.227 kb on + strand at 970.348 kb on + strand at 970.713 kb on + strand, within Atu8143 at 970.722 kb on + strand, within Atu8143 at 970.976 kb on - strand, within Atu8143 at 971.099 kb on - strand at 971.238 kb on + strand at 971.238 kb on + strand at 971.258 kb on - strand at 971.425 kb on + strand at 971.537 kb on - strand at 971.738 kb on + strand, within Atu0981 at 971.782 kb on - strand, within Atu0981 at 971.855 kb on + strand, within Atu0981 at 971.863 kb on - strand, within Atu0981 at 971.868 kb on + strand, within Atu0981 at 971.870 kb on - strand, within Atu0981 at 971.963 kb on + strand, within Atu0981 at 972.081 kb on + strand, within Atu0981
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 969,390 + Atu0979 0.48 +0.3 969,465 + Atu0979 0.53 +0.0 969,466 - Atu0979 0.53 -1.9 969,490 - Atu0979 0.55 -0.4 969,587 + Atu0979 0.62 -0.7 969,590 + Atu0979 0.62 +0.5 969,600 + Atu0979 0.63 -0.6 969,623 - Atu0979 0.65 -2.4 969,784 + Atu0979 0.76 -0.4 969,829 + Atu0979 0.79 -1.4 969,869 - Atu0979 0.82 -0.4 969,896 - Atu0979 0.84 -0.2 970,076 + -0.9 970,076 + -2.4 970,076 + -0.5 970,076 + -1.3 970,084 - -1.9 970,084 - -1.2 970,137 - +0.7 970,155 - -0.5 970,188 + +0.2 970,203 + +0.0 970,221 - -0.9 970,227 + +0.0 970,227 + +0.7 970,348 + -1.3 970,713 + Atu8143 0.50 +0.8 970,722 + Atu8143 0.51 +0.6 970,976 - Atu8143 0.80 +1.0 971,099 - +0.4 971,238 + +0.3 971,238 + +0.2 971,258 - -0.2 971,425 + -1.3 971,537 - -0.7 971,738 + Atu0981 0.13 -1.9 971,782 - Atu0981 0.14 -1.1 971,855 + Atu0981 0.17 -1.2 971,863 - Atu0981 0.17 +0.3 971,868 + Atu0981 0.17 -2.1 971,870 - Atu0981 0.17 -1.8 971,963 + Atu0981 0.20 -2.3 972,081 + Atu0981 0.24 +0.0
Or see this region's nucleotide sequence