Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6170 and Atu6171 are separated by 16 nucleotides Atu6171 and Atu6172 are separated by 100 nucleotides
Atu6170: Atu6170 - component of type IV secretion system, at 185,305 to 187,674
Atu6170
Atu6171: Atu6171 - component of type IV secretion system, at 187,691 to 188,353
Atu6171
Atu6172: Atu6172 - component of type IV secretion system, at 188,454 to 189,341
Atu6172
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 186.691 kb on - strand, within Atu6170 at 186.711 kb on - strand, within Atu6170 at 186.718 kb on - strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.756 kb on + strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.764 kb on - strand, within Atu6170 at 186.798 kb on + strand, within Atu6170 at 186.849 kb on + strand, within Atu6170 at 186.880 kb on - strand, within Atu6170 at 186.908 kb on - strand, within Atu6170 at 186.929 kb on - strand, within Atu6170 at 186.975 kb on + strand, within Atu6170 at 186.992 kb on - strand, within Atu6170 at 187.006 kb on + strand, within Atu6170 at 187.006 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.014 kb on - strand, within Atu6170 at 187.030 kb on + strand, within Atu6170 at 187.030 kb on + strand, within Atu6170 at 187.035 kb on + strand, within Atu6170 at 187.038 kb on - strand, within Atu6170 at 187.038 kb on - strand, within Atu6170 at 187.038 kb on - strand, within Atu6170 at 187.043 kb on - strand, within Atu6170 at 187.144 kb on + strand, within Atu6170 at 187.150 kb on + strand, within Atu6170 at 187.150 kb on + strand, within Atu6170 at 187.158 kb on - strand, within Atu6170 at 187.182 kb on - strand, within Atu6170 at 187.379 kb on - strand, within Atu6170 at 187.405 kb on + strand, within Atu6170 at 187.453 kb on + strand at 187.473 kb on - strand at 187.473 kb on - strand at 187.482 kb on - strand at 187.496 kb on - strand at 187.520 kb on + strand at 187.569 kb on + strand at 187.569 kb on + strand at 187.569 kb on + strand at 187.577 kb on - strand at 187.577 kb on - strand at 187.594 kb on - strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.606 kb on + strand at 187.614 kb on - strand at 187.614 kb on - strand at 187.617 kb on + strand at 187.622 kb on + strand at 187.681 kb on - strand at 187.705 kb on + strand at 187.731 kb on + strand at 187.731 kb on + strand at 187.818 kb on - strand, within Atu6171 at 187.839 kb on + strand, within Atu6171 at 187.847 kb on - strand, within Atu6171 at 187.847 kb on - strand, within Atu6171 at 187.864 kb on - strand, within Atu6171 at 187.892 kb on + strand, within Atu6171 at 188.026 kb on - strand, within Atu6171 at 188.036 kb on + strand, within Atu6171 at 188.044 kb on - strand, within Atu6171 at 188.095 kb on - strand, within Atu6171 at 188.103 kb on - strand, within Atu6171 at 188.136 kb on + strand, within Atu6171 at 188.229 kb on + strand, within Atu6171 at 188.269 kb on + strand, within Atu6171 at 188.277 kb on - strand, within Atu6171 at 188.305 kb on + strand at 188.334 kb on + strand at 188.348 kb on + strand at 188.356 kb on - strand at 188.356 kb on - strand at 188.374 kb on + strand at 188.379 kb on + strand at 188.444 kb on + strand at 188.452 kb on - strand at 188.452 kb on - strand at 188.485 kb on - strand at 188.528 kb on - strand at 188.542 kb on - strand at 188.548 kb on + strand, within Atu6172 at 188.584 kb on + strand, within Atu6172 at 188.586 kb on - strand, within Atu6172 at 188.594 kb on - strand, within Atu6172 at 188.598 kb on + strand, within Atu6172 at 188.598 kb on + strand, within Atu6172 at 188.607 kb on + strand, within Atu6172 at 188.662 kb on - strand, within Atu6172 at 188.699 kb on - strand, within Atu6172 at 188.781 kb on + strand, within Atu6172 at 188.789 kb on - strand, within Atu6172 at 188.789 kb on - strand, within Atu6172 at 188.789 kb on - strand, within Atu6172 at 188.799 kb on - strand, within Atu6172 at 188.801 kb on + strand, within Atu6172 at 188.809 kb on - strand, within Atu6172 at 188.818 kb on + strand, within Atu6172 at 188.818 kb on + strand, within Atu6172 at 188.818 kb on + strand, within Atu6172 at 188.826 kb on - strand, within Atu6172 at 188.898 kb on + strand, within Atu6172 at 188.921 kb on + strand, within Atu6172 at 188.981 kb on + strand, within Atu6172 at 188.988 kb on + strand, within Atu6172 at 189.003 kb on + strand, within Atu6172 at 189.043 kb on + strand, within Atu6172 at 189.061 kb on + strand, within Atu6172 at 189.062 kb on - strand, within Atu6172 at 189.069 kb on - strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.133 kb on + strand, within Atu6172 at 189.141 kb on - strand, within Atu6172 at 189.311 kb on - strand at 189.311 kb on - strand at 189.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 186,691 - Atu6170 0.58 -1.6 186,711 - Atu6170 0.59 +0.4 186,718 - Atu6170 0.60 +0.1 186,756 + Atu6170 0.61 +0.4 186,756 + Atu6170 0.61 +0.3 186,756 + Atu6170 0.61 +0.8 186,756 + Atu6170 0.61 +0.1 186,756 + Atu6170 0.61 +0.9 186,756 + Atu6170 0.61 -0.1 186,756 + Atu6170 0.61 +0.6 186,756 + Atu6170 0.61 +0.9 186,756 + Atu6170 0.61 +1.0 186,756 + Atu6170 0.61 -0.3 186,756 + Atu6170 0.61 +0.0 186,756 + Atu6170 0.61 +0.1 186,764 - Atu6170 0.62 +0.4 186,764 - Atu6170 0.62 -0.4 186,764 - Atu6170 0.62 +0.5 186,764 - Atu6170 0.62 +0.3 186,764 - Atu6170 0.62 +0.4 186,764 - Atu6170 0.62 -0.7 186,764 - Atu6170 0.62 +0.3 186,798 + Atu6170 0.63 +0.2 186,849 + Atu6170 0.65 +0.7 186,880 - Atu6170 0.66 -0.7 186,908 - Atu6170 0.68 +0.6 186,929 - Atu6170 0.69 +1.1 186,975 + Atu6170 0.70 -0.9 186,992 - Atu6170 0.71 +1.8 187,006 + Atu6170 0.72 +0.5 187,006 - Atu6170 0.72 +0.3 187,014 - Atu6170 0.72 +1.2 187,014 - Atu6170 0.72 +1.9 187,014 - Atu6170 0.72 +0.0 187,014 - Atu6170 0.72 +0.3 187,030 + Atu6170 0.73 +1.1 187,030 + Atu6170 0.73 +0.4 187,035 + Atu6170 0.73 -0.5 187,038 - Atu6170 0.73 +0.3 187,038 - Atu6170 0.73 -0.5 187,038 - Atu6170 0.73 +0.8 187,043 - Atu6170 0.73 +0.1 187,144 + Atu6170 0.78 -0.0 187,150 + Atu6170 0.78 +0.4 187,150 + Atu6170 0.78 -3.0 187,158 - Atu6170 0.78 +0.6 187,182 - Atu6170 0.79 +0.7 187,379 - Atu6170 0.88 +0.5 187,405 + Atu6170 0.89 +0.7 187,453 + -0.3 187,473 - +0.3 187,473 - +1.8 187,482 - +0.0 187,496 - +2.0 187,520 + +1.0 187,569 + +0.1 187,569 + +0.4 187,569 + +0.2 187,577 - +0.5 187,577 - -0.3 187,594 - -0.1 187,606 + -0.2 187,606 + -0.2 187,606 + +0.7 187,606 + +0.6 187,614 - -1.6 187,614 - +1.6 187,617 + +0.6 187,622 + -0.8 187,681 - -2.0 187,705 + +0.5 187,731 + +0.7 187,731 + -0.7 187,818 - Atu6171 0.19 +0.7 187,839 + Atu6171 0.22 -0.4 187,847 - Atu6171 0.24 +0.5 187,847 - Atu6171 0.24 +0.4 187,864 - Atu6171 0.26 +0.9 187,892 + Atu6171 0.30 -0.4 188,026 - Atu6171 0.51 +0.2 188,036 + Atu6171 0.52 -0.9 188,044 - Atu6171 0.53 +0.5 188,095 - Atu6171 0.61 -0.5 188,103 - Atu6171 0.62 +0.3 188,136 + Atu6171 0.67 -0.6 188,229 + Atu6171 0.81 +0.3 188,269 + Atu6171 0.87 -0.1 188,277 - Atu6171 0.88 -0.4 188,305 + +0.8 188,334 + +0.1 188,348 + -0.3 188,356 - +0.3 188,356 - +0.4 188,374 + +0.7 188,379 + -0.4 188,444 + -1.0 188,452 - -1.6 188,452 - -0.6 188,485 - -0.0 188,528 - -0.4 188,542 - +0.6 188,548 + Atu6172 0.11 +0.1 188,584 + Atu6172 0.15 +0.5 188,586 - Atu6172 0.15 +2.4 188,594 - Atu6172 0.16 +0.1 188,598 + Atu6172 0.16 +0.1 188,598 + Atu6172 0.16 -0.0 188,607 + Atu6172 0.17 -0.3 188,662 - Atu6172 0.23 +0.5 188,699 - Atu6172 0.28 -0.2 188,781 + Atu6172 0.37 +0.2 188,789 - Atu6172 0.38 -0.8 188,789 - Atu6172 0.38 +0.5 188,789 - Atu6172 0.38 +1.4 188,799 - Atu6172 0.39 -1.5 188,801 + Atu6172 0.39 +4.2 188,809 - Atu6172 0.40 +0.4 188,818 + Atu6172 0.41 +0.3 188,818 + Atu6172 0.41 -0.0 188,818 + Atu6172 0.41 -0.1 188,826 - Atu6172 0.42 +0.1 188,898 + Atu6172 0.50 +0.8 188,921 + Atu6172 0.53 +1.1 188,981 + Atu6172 0.59 -0.2 188,988 + Atu6172 0.60 +0.8 189,003 + Atu6172 0.62 -0.9 189,043 + Atu6172 0.66 +0.2 189,061 + Atu6172 0.68 -1.2 189,062 - Atu6172 0.68 -0.6 189,069 - Atu6172 0.69 +0.2 189,133 + Atu6172 0.76 +0.2 189,133 + Atu6172 0.76 -1.2 189,133 + Atu6172 0.76 +0.5 189,133 + Atu6172 0.76 +0.5 189,133 + Atu6172 0.76 -0.3 189,133 + Atu6172 0.76 +0.6 189,141 - Atu6172 0.77 +0.4 189,311 - +0.1 189,311 - +0.5 189,343 - -1.0
Or see this region's nucleotide sequence