Experiment: Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3791 and Atu3792 overlap by 4 nucleotides Atu3792 and Atu3793 are separated by 258 nucleotides
Atu3791: Atu3791 - L-asparaginase, at 883,263 to 884,216
Atu3791
Atu3792: Atu3792 - L-asparagine permease, at 884,213 to 885,670
Atu3792
Atu3793: Atu3793 - aspartate ammonia-lyase, at 885,929 to 887,374
Atu3793
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 883.231 kb on - strand at 883.307 kb on - strand at 883.347 kb on + strand at 883.347 kb on + strand at 883.350 kb on - strand at 883.355 kb on - strand at 883.372 kb on - strand, within Atu3791 at 883.434 kb on - strand, within Atu3791 at 883.489 kb on - strand, within Atu3791 at 883.489 kb on - strand, within Atu3791 at 883.517 kb on - strand, within Atu3791 at 883.524 kb on - strand, within Atu3791 at 883.576 kb on - strand, within Atu3791 at 883.627 kb on + strand, within Atu3791 at 883.635 kb on - strand, within Atu3791 at 883.635 kb on - strand, within Atu3791 at 883.677 kb on - strand, within Atu3791 at 883.784 kb on - strand, within Atu3791 at 883.885 kb on + strand, within Atu3791 at 883.885 kb on + strand, within Atu3791 at 883.909 kb on + strand, within Atu3791 at 883.942 kb on + strand, within Atu3791 at 884.036 kb on - strand, within Atu3791 at 884.037 kb on + strand, within Atu3791 at 884.038 kb on + strand, within Atu3791 at 884.065 kb on + strand, within Atu3791 at 884.065 kb on + strand, within Atu3791 at 884.065 kb on + strand, within Atu3791 at 884.073 kb on - strand, within Atu3791 at 884.080 kb on - strand, within Atu3791 at 884.108 kb on - strand, within Atu3791 at 884.120 kb on + strand, within Atu3791 at 884.197 kb on + strand at 884.197 kb on + strand at 884.197 kb on + strand at 884.197 kb on + strand at 884.205 kb on - strand at 884.205 kb on - strand at 884.224 kb on + strand at 884.224 kb on + strand at 884.275 kb on + strand at 884.280 kb on - strand at 884.407 kb on - strand, within Atu3792 at 884.532 kb on - strand, within Atu3792 at 884.552 kb on + strand, within Atu3792 at 884.572 kb on - strand, within Atu3792 at 884.625 kb on - strand, within Atu3792 at 884.743 kb on - strand, within Atu3792 at 884.778 kb on - strand, within Atu3792 at 884.810 kb on - strand, within Atu3792 at 884.837 kb on - strand, within Atu3792 at 884.837 kb on - strand, within Atu3792 at 884.842 kb on - strand, within Atu3792 at 884.922 kb on - strand, within Atu3792 at 884.937 kb on - strand, within Atu3792 at 884.986 kb on - strand, within Atu3792 at 885.134 kb on + strand, within Atu3792 at 885.151 kb on + strand, within Atu3792 at 885.154 kb on - strand, within Atu3792 at 885.238 kb on - strand, within Atu3792 at 885.244 kb on + strand, within Atu3792 at 885.268 kb on - strand, within Atu3792 at 885.315 kb on + strand, within Atu3792 at 885.534 kb on + strand at 885.600 kb on + strand at 885.601 kb on - strand at 885.612 kb on + strand at 885.680 kb on - strand at 885.680 kb on - strand at 885.869 kb on - strand at 885.967 kb on - strand at 885.975 kb on + strand at 886.000 kb on + strand at 886.007 kb on + strand at 886.008 kb on - strand at 886.071 kb on - strand at 886.093 kb on - strand, within Atu3793 at 886.103 kb on - strand, within Atu3793 at 886.103 kb on - strand, within Atu3793 at 886.128 kb on + strand, within Atu3793 at 886.164 kb on - strand, within Atu3793 at 886.226 kb on + strand, within Atu3793 at 886.287 kb on + strand, within Atu3793 at 886.392 kb on + strand, within Atu3793 at 886.429 kb on + strand, within Atu3793 at 886.429 kb on + strand, within Atu3793 at 886.437 kb on - strand, within Atu3793 at 886.494 kb on - strand, within Atu3793 at 886.582 kb on - strand, within Atu3793 at 886.582 kb on - strand, within Atu3793 at 886.665 kb on + strand, within Atu3793
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 883,231 - +2.3 883,307 - +0.3 883,347 + -0.3 883,347 + +0.9 883,350 - +0.3 883,355 - -0.4 883,372 - Atu3791 0.11 +0.7 883,434 - Atu3791 0.18 -1.7 883,489 - Atu3791 0.24 +0.3 883,489 - Atu3791 0.24 +1.5 883,517 - Atu3791 0.27 +1.0 883,524 - Atu3791 0.27 +2.3 883,576 - Atu3791 0.33 +3.0 883,627 + Atu3791 0.38 +1.6 883,635 - Atu3791 0.39 -1.0 883,635 - Atu3791 0.39 +1.1 883,677 - Atu3791 0.43 -0.8 883,784 - Atu3791 0.55 +1.0 883,885 + Atu3791 0.65 +1.6 883,885 + Atu3791 0.65 +0.7 883,909 + Atu3791 0.68 +0.7 883,942 + Atu3791 0.71 +1.5 884,036 - Atu3791 0.81 -0.8 884,037 + Atu3791 0.81 +0.5 884,038 + Atu3791 0.81 +0.3 884,065 + Atu3791 0.84 +3.4 884,065 + Atu3791 0.84 +1.7 884,065 + Atu3791 0.84 +3.1 884,073 - Atu3791 0.85 +0.5 884,080 - Atu3791 0.86 +0.9 884,108 - Atu3791 0.89 +0.6 884,120 + Atu3791 0.90 -0.6 884,197 + -0.7 884,197 + -0.7 884,197 + +0.3 884,197 + +0.7 884,205 - +0.6 884,205 - +0.7 884,224 + -0.5 884,224 + -1.3 884,275 + -1.2 884,280 - -0.8 884,407 - Atu3792 0.13 -0.2 884,532 - Atu3792 0.22 +0.2 884,552 + Atu3792 0.23 -1.2 884,572 - Atu3792 0.25 -2.3 884,625 - Atu3792 0.28 +1.0 884,743 - Atu3792 0.36 -0.1 884,778 - Atu3792 0.39 +0.9 884,810 - Atu3792 0.41 -1.9 884,837 - Atu3792 0.43 +0.0 884,837 - Atu3792 0.43 -0.5 884,842 - Atu3792 0.43 -1.3 884,922 - Atu3792 0.49 +0.9 884,937 - Atu3792 0.50 -0.7 884,986 - Atu3792 0.53 -0.2 885,134 + Atu3792 0.63 -0.9 885,151 + Atu3792 0.64 -0.1 885,154 - Atu3792 0.65 +0.5 885,238 - Atu3792 0.70 +1.3 885,244 + Atu3792 0.71 -1.9 885,268 - Atu3792 0.72 -0.9 885,315 + Atu3792 0.76 +0.0 885,534 + -0.5 885,600 + -0.7 885,601 - -0.7 885,612 + +0.7 885,680 - -0.0 885,680 - -1.0 885,869 - -0.0 885,967 - -1.8 885,975 + -0.5 886,000 + -0.5 886,007 + +0.6 886,008 - -0.4 886,071 - +0.4 886,093 - Atu3793 0.11 +0.3 886,103 - Atu3793 0.12 -1.1 886,103 - Atu3793 0.12 +0.2 886,128 + Atu3793 0.14 -0.1 886,164 - Atu3793 0.16 +0.9 886,226 + Atu3793 0.21 +0.5 886,287 + Atu3793 0.25 -0.1 886,392 + Atu3793 0.32 -0.3 886,429 + Atu3793 0.35 +0.0 886,429 + Atu3793 0.35 +0.0 886,437 - Atu3793 0.35 +1.4 886,494 - Atu3793 0.39 +0.8 886,582 - Atu3793 0.45 +0.3 886,582 - Atu3793 0.45 -0.2 886,665 + Atu3793 0.51 -1.4
Or see this region's nucleotide sequence