Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4781 and GFF4782 overlap by 7 nucleotides GFF4782 and GFF4783 are separated by 196 nucleotides GFF4783 and GFF4784 are separated by 18 nucleotides
GFF4781 - FIG00641944: hypothetical protein, at 89,231 to 90,493
GFF4781
GFF4782 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 90,487 to 91,410
GFF4782
GFF4783 - DeoR family transcriptional regulator probably related to glycerate, glycolaldehyde metabolism, at 91,607 to 92,371
GFF4783
GFF4784 - Transcriptional regulator, MarR family, at 92,390 to 92,794
GFF4784
Position (kb) 90
91
92 Strain fitness (log2 ratio) -1
0
1
2 at 89.511 kb on + strand, within GFF4781 at 89.512 kb on - strand, within GFF4781 at 90.111 kb on + strand, within GFF4781 at 90.112 kb on - strand, within GFF4781 at 90.112 kb on - strand, within GFF4781 at 90.247 kb on - strand, within GFF4781 at 90.255 kb on + strand, within GFF4781 at 90.601 kb on - strand, within GFF4782 at 90.601 kb on - strand, within GFF4782 at 90.605 kb on - strand, within GFF4782 at 90.708 kb on - strand, within GFF4782 at 90.708 kb on - strand, within GFF4782 at 90.782 kb on + strand, within GFF4782 at 90.782 kb on + strand, within GFF4782 at 90.782 kb on + strand, within GFF4782 at 90.782 kb on + strand, within GFF4782 at 90.783 kb on - strand, within GFF4782 at 90.846 kb on + strand, within GFF4782 at 91.440 kb on - strand at 91.540 kb on + strand at 91.615 kb on + strand at 91.642 kb on + strand at 91.726 kb on - strand, within GFF4783 at 91.892 kb on - strand, within GFF4783 at 91.892 kb on - strand, within GFF4783 at 91.895 kb on + strand, within GFF4783 at 91.895 kb on + strand, within GFF4783 at 91.909 kb on + strand, within GFF4783 at 91.952 kb on - strand, within GFF4783 at 92.020 kb on + strand, within GFF4783 at 92.237 kb on + strand, within GFF4783 at 92.344 kb on + strand at 92.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 89,511 + GFF4781 0.22 +0.7 89,512 - GFF4781 0.22 -0.2 90,111 + GFF4781 0.70 -0.6 90,112 - GFF4781 0.70 -0.1 90,112 - GFF4781 0.70 +0.6 90,247 - GFF4781 0.80 -0.4 90,255 + GFF4781 0.81 +0.4 90,601 - GFF4782 0.12 +0.1 90,601 - GFF4782 0.12 -0.1 90,605 - GFF4782 0.13 +0.1 90,708 - GFF4782 0.24 +0.2 90,708 - GFF4782 0.24 +2.0 90,782 + GFF4782 0.32 -1.5 90,782 + GFF4782 0.32 -0.3 90,782 + GFF4782 0.32 +0.3 90,782 + GFF4782 0.32 +0.9 90,783 - GFF4782 0.32 +0.3 90,846 + GFF4782 0.39 +1.4 91,440 - +0.6 91,540 + -0.0 91,615 + +0.0 91,642 + -0.8 91,726 - GFF4783 0.16 -0.2 91,892 - GFF4783 0.37 +0.3 91,892 - GFF4783 0.37 +0.1 91,895 + GFF4783 0.38 -0.1 91,895 + GFF4783 0.38 +0.6 91,909 + GFF4783 0.39 +0.3 91,952 - GFF4783 0.45 -0.7 92,020 + GFF4783 0.54 -0.4 92,237 + GFF4783 0.82 -1.5 92,344 + +0.6 92,409 - -0.5
Or see this region's nucleotide sequence