Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4336

Experiment: Br60_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4334 and GFF4335 are separated by 96 nucleotidesGFF4335 and GFF4336 overlap by 38 nucleotidesGFF4336 and GFF4337 are separated by 218 nucleotidesGFF4337 and GFF4338 are separated by 46 nucleotides GFF4334 - Phosphonoacetaldehyde hydrolase (EC 3.11.1.1), at 115,533 to 116,342 GFF4334 GFF4335 - DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31, at 116,439 to 117,029 GFF4335 GFF4336 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 116,992 to 117,810 GFF4336 GFF4337 - FIG001943: hypothetical protein YajQ, at 118,029 to 118,520 GFF4337 GFF4338 - Putative transport protein, at 118,567 to 119,931 GFF4338 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1 2at 116.262 kb on + strandat 116.306 kb on + strandat 116.449 kb on + strandat 116.450 kb on - strandat 116.454 kb on - strandat 116.454 kb on - strandat 116.575 kb on - strand, within GFF4335at 116.679 kb on - strand, within GFF4335at 116.679 kb on - strand, within GFF4335at 116.994 kb on - strandat 116.994 kb on - strandat 117.117 kb on - strand, within GFF4336at 117.216 kb on - strand, within GFF4336at 117.303 kb on + strand, within GFF4336at 117.304 kb on - strand, within GFF4336at 117.427 kb on + strand, within GFF4336at 117.489 kb on + strand, within GFF4336at 117.489 kb on + strand, within GFF4336at 117.490 kb on - strand, within GFF4336at 117.495 kb on + strand, within GFF4336at 117.496 kb on - strand, within GFF4336at 117.496 kb on - strand, within GFF4336at 117.526 kb on - strand, within GFF4336at 117.553 kb on - strand, within GFF4336at 117.580 kb on - strand, within GFF4336at 117.612 kb on + strand, within GFF4336at 117.704 kb on - strand, within GFF4336at 117.798 kb on - strandat 117.826 kb on + strandat 117.826 kb on + strandat 117.950 kb on + strandat 117.991 kb on + strandat 117.992 kb on - strandat 118.163 kb on + strand, within GFF4337at 118.773 kb on + strand, within GFF4338at 118.792 kb on + strand, within GFF4338

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
remove
116,262 + +0.8
116,306 + +0.1
116,449 + +0.4
116,450 - +0.4
116,454 - +0.7
116,454 - +0.9
116,575 - GFF4335 0.23 +0.2
116,679 - GFF4335 0.41 +0.2
116,679 - GFF4335 0.41 +0.7
116,994 - +0.2
116,994 - +0.8
117,117 - GFF4336 0.15 +0.0
117,216 - GFF4336 0.27 -0.2
117,303 + GFF4336 0.38 -0.4
117,304 - GFF4336 0.38 -0.4
117,427 + GFF4336 0.53 +2.5
117,489 + GFF4336 0.61 +1.4
117,489 + GFF4336 0.61 +0.8
117,490 - GFF4336 0.61 -0.1
117,495 + GFF4336 0.61 -1.0
117,496 - GFF4336 0.62 -0.4
117,496 - GFF4336 0.62 +0.4
117,526 - GFF4336 0.65 -1.0
117,553 - GFF4336 0.68 -0.2
117,580 - GFF4336 0.72 +0.3
117,612 + GFF4336 0.76 -0.0
117,704 - GFF4336 0.87 -2.6
117,798 - +0.5
117,826 + +0.6
117,826 + +0.5
117,950 + +0.3
117,991 + +0.3
117,992 - +0.4
118,163 + GFF4337 0.27 +0.3
118,773 + GFF4338 0.15 +0.9
118,792 + GFF4338 0.16 -0.0

Or see this region's nucleotide sequence