Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3945 and GFF3946 are separated by 18 nucleotides GFF3946 and GFF3947 overlap by 4 nucleotides GFF3947 and GFF3948 are separated by 545 nucleotides
GFF3945 - Propanediol dehydratase large subunit (EC 4.2.1.28), at 225,231 to 226,895
GFF3945
GFF3946 - Propanediol utilization polyhedral body protein PduB, at 226,914 to 227,726
GFF3946
GFF3947 - Propanediol utilization polyhedral body protein PduA, at 227,723 to 227,986
GFF3947
GFF3948 - Propanediol diffusion facilitator, at 228,532 to 229,326
GFF3948
Position (kb) 226
227
228 Strain fitness (log2 ratio) -1
0
1
2 at 226.042 kb on + strand, within GFF3945 at 226.042 kb on + strand, within GFF3945 at 226.042 kb on + strand, within GFF3945 at 226.043 kb on - strand, within GFF3945 at 226.043 kb on - strand, within GFF3945 at 226.043 kb on - strand, within GFF3945 at 226.063 kb on + strand, within GFF3945 at 226.063 kb on + strand, within GFF3945 at 226.064 kb on - strand, within GFF3945 at 226.150 kb on + strand, within GFF3945 at 226.162 kb on - strand, within GFF3945 at 226.922 kb on - strand at 227.040 kb on - strand, within GFF3946 at 227.081 kb on - strand, within GFF3946 at 227.209 kb on + strand, within GFF3946 at 227.209 kb on + strand, within GFF3946 at 227.261 kb on - strand, within GFF3946 at 227.616 kb on - strand, within GFF3946 at 227.630 kb on + strand, within GFF3946 at 227.631 kb on - strand, within GFF3946 at 228.045 kb on + strand at 228.046 kb on - strand at 228.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 226,042 + GFF3945 0.49 -0.5 226,042 + GFF3945 0.49 +0.0 226,042 + GFF3945 0.49 +1.3 226,043 - GFF3945 0.49 -0.4 226,043 - GFF3945 0.49 +0.8 226,043 - GFF3945 0.49 +0.4 226,063 + GFF3945 0.50 +0.4 226,063 + GFF3945 0.50 +1.3 226,064 - GFF3945 0.50 -1.1 226,150 + GFF3945 0.55 -0.1 226,162 - GFF3945 0.56 +0.6 226,922 - +0.4 227,040 - GFF3946 0.15 -0.5 227,081 - GFF3946 0.21 +1.6 227,209 + GFF3946 0.36 +2.1 227,209 + GFF3946 0.36 +0.4 227,261 - GFF3946 0.43 +0.5 227,616 - GFF3946 0.86 +0.2 227,630 + GFF3946 0.88 -0.2 227,631 - GFF3946 0.88 -0.5 228,045 + +0.0 228,046 - -1.3 228,470 + -0.8
Or see this region's nucleotide sequence