Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3871 and GFF3872 overlap by 26 nucleotides GFF3872 and GFF3873 are separated by 12 nucleotides GFF3873 and GFF3874 are separated by 15 nucleotides
GFF3871 - Colanic acid biosynthesis glycosyl transferase WcaC, at 147,369 to 148,586
GFF3871
GFF3872 - Colanic acid polymerase WcaD, at 148,561 to 149,775
GFF3872
GFF3873 - Colanic acid biosynthesis glycosyl transferase WcaE, at 149,788 to 150,534
GFF3873
GFF3874 - Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-), at 150,550 to 151,104
GFF3874
Position (kb) 148
149
150 Strain fitness (log2 ratio) -1
0
1 at 147.853 kb on + strand, within GFF3871 at 148.063 kb on + strand, within GFF3871 at 148.064 kb on - strand, within GFF3871 at 148.193 kb on + strand, within GFF3871 at 148.317 kb on + strand, within GFF3871 at 148.441 kb on + strand, within GFF3871 at 148.442 kb on - strand, within GFF3871 at 148.585 kb on - strand at 148.585 kb on - strand at 148.694 kb on + strand, within GFF3872 at 148.764 kb on + strand, within GFF3872 at 148.765 kb on - strand, within GFF3872 at 148.801 kb on + strand, within GFF3872 at 149.033 kb on - strand, within GFF3872 at 149.350 kb on - strand, within GFF3872 at 149.457 kb on - strand, within GFF3872 at 149.483 kb on - strand, within GFF3872 at 150.042 kb on + strand, within GFF3873 at 150.200 kb on - strand, within GFF3873 at 150.200 kb on - strand, within GFF3873 at 150.662 kb on + strand, within GFF3874
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 147,853 + GFF3871 0.40 -0.3 148,063 + GFF3871 0.57 -0.0 148,064 - GFF3871 0.57 +0.4 148,193 + GFF3871 0.68 -0.2 148,317 + GFF3871 0.78 +1.1 148,441 + GFF3871 0.88 +1.0 148,442 - GFF3871 0.88 -0.2 148,585 - +0.6 148,585 - +0.4 148,694 + GFF3872 0.11 -0.0 148,764 + GFF3872 0.17 -0.1 148,765 - GFF3872 0.17 +1.1 148,801 + GFF3872 0.20 -0.5 149,033 - GFF3872 0.39 -0.7 149,350 - GFF3872 0.65 -0.6 149,457 - GFF3872 0.74 -0.0 149,483 - GFF3872 0.76 -0.3 150,042 + GFF3873 0.34 -0.1 150,200 - GFF3873 0.55 -0.2 150,200 - GFF3873 0.55 +0.3 150,662 + GFF3874 0.20 -0.2
Or see this region's nucleotide sequence