Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3618 and GFF3619 are separated by 467 nucleotides GFF3619 and GFF3620 are separated by 126 nucleotides
GFF3618 - Purine nucleotide synthesis repressor, at 369,973 to 370,998
GFF3618
GFF3619 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 371,466 to 372,047
GFF3619
GFF3620 - FIG00545237: hypothetical protein, at 372,174 to 372,995
GFF3620
Position (kb) 371
372
373 Strain fitness (log2 ratio) -2
-1
0
1 at 370.500 kb on - strand, within GFF3618 at 370.581 kb on + strand, within GFF3618 at 370.679 kb on + strand, within GFF3618 at 370.680 kb on - strand, within GFF3618 at 370.808 kb on - strand, within GFF3618 at 370.879 kb on - strand, within GFF3618 at 370.937 kb on - strand at 370.945 kb on + strand at 370.953 kb on + strand at 371.143 kb on - strand at 371.420 kb on + strand at 371.430 kb on + strand at 371.447 kb on - strand at 371.528 kb on - strand, within GFF3619 at 371.528 kb on - strand, within GFF3619 at 371.557 kb on + strand, within GFF3619 at 371.634 kb on - strand, within GFF3619 at 371.852 kb on + strand, within GFF3619 at 371.945 kb on - strand, within GFF3619 at 371.993 kb on + strand at 371.994 kb on - strand at 372.025 kb on - strand at 372.061 kb on - strand at 372.061 kb on - strand at 372.067 kb on - strand at 372.257 kb on + strand, within GFF3620 at 372.308 kb on - strand, within GFF3620 at 372.380 kb on + strand, within GFF3620 at 372.412 kb on + strand, within GFF3620 at 372.413 kb on - strand, within GFF3620 at 372.413 kb on - strand, within GFF3620 at 372.413 kb on - strand, within GFF3620 at 372.458 kb on + strand, within GFF3620 at 372.459 kb on - strand, within GFF3620 at 372.460 kb on + strand, within GFF3620 at 372.469 kb on + strand, within GFF3620 at 372.524 kb on - strand, within GFF3620 at 372.531 kb on - strand, within GFF3620
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 370,500 - GFF3618 0.51 -0.6 370,581 + GFF3618 0.59 +0.0 370,679 + GFF3618 0.69 -1.0 370,680 - GFF3618 0.69 +1.3 370,808 - GFF3618 0.81 -0.3 370,879 - GFF3618 0.88 +0.5 370,937 - +0.6 370,945 + +0.2 370,953 + +0.4 371,143 - +0.3 371,420 + +0.3 371,430 + +0.6 371,447 - +0.0 371,528 - GFF3619 0.11 +0.2 371,528 - GFF3619 0.11 +0.1 371,557 + GFF3619 0.16 -2.3 371,634 - GFF3619 0.29 -0.1 371,852 + GFF3619 0.66 -1.2 371,945 - GFF3619 0.82 -1.9 371,993 + -1.3 371,994 - -0.4 372,025 - +0.1 372,061 - -0.0 372,061 - -0.2 372,067 - +0.1 372,257 + GFF3620 0.10 -0.4 372,308 - GFF3620 0.16 +0.1 372,380 + GFF3620 0.25 -0.6 372,412 + GFF3620 0.29 +0.2 372,413 - GFF3620 0.29 -1.6 372,413 - GFF3620 0.29 -1.4 372,413 - GFF3620 0.29 -0.2 372,458 + GFF3620 0.35 +0.5 372,459 - GFF3620 0.35 +0.0 372,460 + GFF3620 0.35 +0.5 372,469 + GFF3620 0.36 +0.7 372,524 - GFF3620 0.43 +0.7 372,531 - GFF3620 0.43 -0.9
Or see this region's nucleotide sequence