Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3576 and GFF3577 are separated by 97 nucleotides GFF3577 and GFF3578 are separated by 95 nucleotides GFF3578 and GFF3579 are separated by 6 nucleotides GFF3579 and GFF3580 are separated by 109 nucleotides
GFF3576 - Tetrathionate reductase two-component response regulator, at 335,155 to 335,775
GFF3576
GFF3577 - FIG00637899: hypothetical protein, at 335,873 to 336,085
GFF3577
GFF3578 - COG1683: Uncharacterized conserved protein / FIG143828: Hypothetical protein YbgA, at 336,181 to 337,062
GFF3578
GFF3579 - hypothetical protein, at 337,069 to 337,203
GFF3579
GFF3580 - Transcriptional regulator, MerR family, associated with photolyase, at 337,313 to 338,041
GFF3580
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 335.185 kb on - strand at 335.300 kb on + strand, within GFF3576 at 335.408 kb on + strand, within GFF3576 at 335.542 kb on - strand, within GFF3576 at 335.543 kb on + strand, within GFF3576 at 335.543 kb on + strand, within GFF3576 at 335.655 kb on - strand, within GFF3576 at 335.765 kb on - strand at 336.049 kb on + strand, within GFF3577 at 336.049 kb on + strand, within GFF3577 at 336.245 kb on - strand at 336.245 kb on - strand at 336.248 kb on + strand at 336.445 kb on - strand, within GFF3578 at 336.671 kb on - strand, within GFF3578 at 336.789 kb on - strand, within GFF3578 at 336.789 kb on - strand, within GFF3578 at 336.837 kb on + strand, within GFF3578 at 337.069 kb on - strand at 337.134 kb on + strand, within GFF3579 at 337.599 kb on + strand, within GFF3580 at 337.686 kb on - strand, within GFF3580 at 337.922 kb on + strand, within GFF3580 at 337.923 kb on - strand, within GFF3580 at 337.943 kb on - strand, within GFF3580 at 338.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 335,185 - -0.1 335,300 + GFF3576 0.23 -0.9 335,408 + GFF3576 0.41 -0.4 335,542 - GFF3576 0.62 -0.7 335,543 + GFF3576 0.62 -3.4 335,543 + GFF3576 0.62 -0.7 335,655 - GFF3576 0.81 +1.0 335,765 - -0.4 336,049 + GFF3577 0.83 -3.3 336,049 + GFF3577 0.83 +0.4 336,245 - +0.2 336,245 - -0.8 336,248 + -0.7 336,445 - GFF3578 0.30 -1.1 336,671 - GFF3578 0.56 -0.8 336,789 - GFF3578 0.69 -0.5 336,789 - GFF3578 0.69 +0.0 336,837 + GFF3578 0.74 -0.8 337,069 - +0.0 337,134 + GFF3579 0.48 -0.8 337,599 + GFF3580 0.39 +0.2 337,686 - GFF3580 0.51 -1.1 337,922 + GFF3580 0.84 +0.5 337,923 - GFF3580 0.84 -0.3 337,943 - GFF3580 0.86 +0.0 338,010 - -0.5
Or see this region's nucleotide sequence