Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3111

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3108 and GFF3109 are separated by 7 nucleotidesGFF3109 and GFF3110 overlap by 4 nucleotidesGFF3110 and GFF3111 are separated by 84 nucleotidesGFF3111 and GFF3112 are separated by 306 nucleotides GFF3108 - Uptake hydrogenase small subunit precursor (EC 1.12.99.6), at 117,779 to 118,897 GFF3108 GFF3109 - FIG01046062: hypothetical protein, at 118,905 to 119,090 GFF3109 GFF3110 - FIG00638753: hypothetical protein, at 119,087 to 119,374 GFF3110 GFF3111 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 119,459 to 121,102 GFF3111 GFF3112 - Putative membrane protein, at 121,409 to 121,903 GFF3112 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 118.512 kb on + strand, within GFF3108at 118.513 kb on - strand, within GFF3108at 118.588 kb on + strand, within GFF3108at 118.588 kb on + strand, within GFF3108at 118.641 kb on + strand, within GFF3108at 118.882 kb on + strandat 118.885 kb on + strandat 118.886 kb on - strandat 118.900 kb on + strandat 118.903 kb on - strandat 118.906 kb on + strandat 118.906 kb on + strandat 119.054 kb on - strand, within GFF3109at 119.054 kb on - strand, within GFF3109at 119.061 kb on + strand, within GFF3109at 119.071 kb on + strand, within GFF3109at 119.071 kb on + strand, within GFF3109at 119.219 kb on - strand, within GFF3110at 119.248 kb on + strand, within GFF3110at 119.249 kb on - strand, within GFF3110at 119.249 kb on - strand, within GFF3110at 119.281 kb on + strand, within GFF3110at 119.282 kb on - strand, within GFF3110at 119.320 kb on - strand, within GFF3110at 119.320 kb on - strand, within GFF3110at 119.320 kb on - strand, within GFF3110at 119.320 kb on - strand, within GFF3110at 119.415 kb on + strandat 119.419 kb on + strandat 119.439 kb on - strandat 119.482 kb on + strandat 119.483 kb on - strandat 119.750 kb on - strand, within GFF3111at 119.907 kb on - strand, within GFF3111at 119.907 kb on - strand, within GFF3111at 120.005 kb on - strand, within GFF3111at 120.005 kb on - strand, within GFF3111at 120.007 kb on + strand, within GFF3111at 120.007 kb on + strand, within GFF3111at 120.019 kb on + strand, within GFF3111at 120.253 kb on + strand, within GFF3111at 120.286 kb on + strand, within GFF3111at 120.368 kb on + strand, within GFF3111at 120.526 kb on + strand, within GFF3111at 120.527 kb on - strand, within GFF3111at 120.546 kb on + strand, within GFF3111at 120.547 kb on - strand, within GFF3111at 120.547 kb on - strand, within GFF3111at 120.547 kb on - strand, within GFF3111at 120.767 kb on - strand, within GFF3111at 120.938 kb on + strandat 120.939 kb on - strandat 120.974 kb on - strandat 121.014 kb on + strandat 121.015 kb on - strandat 121.017 kb on - strandat 121.078 kb on + strandat 121.180 kb on - strandat 121.182 kb on - strandat 121.182 kb on - strandat 121.183 kb on + strandat 121.183 kb on + strandat 121.184 kb on - strandat 121.291 kb on - strandat 121.497 kb on - strand, within GFF3112at 121.692 kb on - strand, within GFF3112at 121.876 kb on - strandat 121.880 kb on + strandat 121.881 kb on - strandat 121.938 kb on - strandat 121.939 kb on + strandat 121.939 kb on + strandat 121.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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118,512 + GFF3108 0.66 +0.4
118,513 - GFF3108 0.66 +0.3
118,588 + GFF3108 0.72 -1.2
118,588 + GFF3108 0.72 -0.3
118,641 + GFF3108 0.77 -0.2
118,882 + -0.3
118,885 + -0.8
118,886 - -1.0
118,900 + -1.2
118,903 - +0.1
118,906 + +0.1
118,906 + +0.1
119,054 - GFF3109 0.80 +0.4
119,054 - GFF3109 0.80 -0.2
119,061 + GFF3109 0.84 +0.2
119,071 + GFF3109 0.89 +0.3
119,071 + GFF3109 0.89 -0.2
119,219 - GFF3110 0.46 +1.0
119,248 + GFF3110 0.56 -0.2
119,249 - GFF3110 0.56 -0.2
119,249 - GFF3110 0.56 -0.0
119,281 + GFF3110 0.67 -0.0
119,282 - GFF3110 0.68 +0.0
119,320 - GFF3110 0.81 -0.3
119,320 - GFF3110 0.81 +0.2
119,320 - GFF3110 0.81 +0.2
119,320 - GFF3110 0.81 -0.2
119,415 + +0.3
119,419 + +0.2
119,439 - +0.0
119,482 + +1.3
119,483 - +0.4
119,750 - GFF3111 0.18 -1.9
119,907 - GFF3111 0.27 +0.3
119,907 - GFF3111 0.27 +0.6
120,005 - GFF3111 0.33 +0.2
120,005 - GFF3111 0.33 -2.7
120,007 + GFF3111 0.33 +0.1
120,007 + GFF3111 0.33 -0.8
120,019 + GFF3111 0.34 -0.4
120,253 + GFF3111 0.48 +0.0
120,286 + GFF3111 0.50 +2.0
120,368 + GFF3111 0.55 -0.4
120,526 + GFF3111 0.65 -1.3
120,527 - GFF3111 0.65 +0.1
120,546 + GFF3111 0.66 +0.8
120,547 - GFF3111 0.66 -0.4
120,547 - GFF3111 0.66 -0.2
120,547 - GFF3111 0.66 -0.9
120,767 - GFF3111 0.80 -1.4
120,938 + -0.4
120,939 - -0.0
120,974 - -0.9
121,014 + +0.3
121,015 - -1.1
121,017 - +0.1
121,078 + -0.3
121,180 - +1.4
121,182 - -0.2
121,182 - +0.1
121,183 + +0.0
121,183 + -1.8
121,184 - -0.8
121,291 - +0.3
121,497 - GFF3112 0.18 +0.6
121,692 - GFF3112 0.57 -1.1
121,876 - -0.1
121,880 + +0.6
121,881 - -0.2
121,938 - +1.9
121,939 + -0.1
121,939 + -0.6
121,984 - +0.4

Or see this region's nucleotide sequence