Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2859 and GFF2860 are separated by 286 nucleotides GFF2860 and GFF2861 are separated by 329 nucleotides GFF2861 and GFF2862 are separated by 935 nucleotides
GFF2859 - hypothetical protein, at 378,287 to 378,418
GFF2859
GFF2860 - FIG074102: hypothetical protein, at 378,705 to 379,085
GFF2860
GFF2861 - FIG01045929: hypothetical protein, at 379,415 to 379,891
GFF2861
GFF2862 - FIG01046381: hypothetical protein, at 380,827 to 381,021
GFF2862
Position (kb) 379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 379.316 kb on + strand at 379.348 kb on + strand at 379.348 kb on + strand at 379.471 kb on - strand, within GFF2861 at 379.472 kb on + strand, within GFF2861 at 379.478 kb on - strand, within GFF2861 at 379.478 kb on - strand, within GFF2861 at 379.494 kb on + strand, within GFF2861 at 379.565 kb on - strand, within GFF2861 at 379.609 kb on - strand, within GFF2861 at 379.750 kb on - strand, within GFF2861 at 379.952 kb on + strand at 379.995 kb on + strand at 379.997 kb on + strand at 380.051 kb on + strand at 380.063 kb on + strand at 380.127 kb on + strand at 380.128 kb on - strand at 380.131 kb on + strand at 380.131 kb on + strand at 380.131 kb on + strand at 380.150 kb on + strand at 380.151 kb on - strand at 380.256 kb on - strand at 380.281 kb on - strand at 380.319 kb on - strand at 380.351 kb on + strand at 380.354 kb on - strand at 380.847 kb on + strand, within GFF2862 at 380.854 kb on - strand, within GFF2862
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 379,316 + +0.1 379,348 + -1.2 379,348 + -0.6 379,471 - GFF2861 0.12 -0.8 379,472 + GFF2861 0.12 -0.5 379,478 - GFF2861 0.13 -0.9 379,478 - GFF2861 0.13 -1.0 379,494 + GFF2861 0.17 -0.6 379,565 - GFF2861 0.31 -0.4 379,609 - GFF2861 0.41 -0.6 379,750 - GFF2861 0.70 -2.9 379,952 + -0.5 379,995 + -0.4 379,997 + -0.6 380,051 + -1.4 380,063 + -0.4 380,127 + -1.3 380,128 - +0.3 380,131 + +0.1 380,131 + +0.4 380,131 + -0.4 380,150 + +0.2 380,151 - -0.2 380,256 - +0.2 380,281 - +0.3 380,319 - -1.5 380,351 + +1.6 380,354 - -0.4 380,847 + GFF2862 0.10 -0.1 380,854 - GFF2862 0.14 -0.7
Or see this region's nucleotide sequence