Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2674

Experiment: Br60_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2673 and GFF2674 are separated by 118 nucleotidesGFF2674 and GFF2675 are separated by 96 nucleotides GFF2673 - Probable transcription regulator protein of MDR efflux pump cluster, at 195,565 to 196,470 GFF2673 GFF2674 - FIG00553873: hypothetical protein, at 196,589 to 197,518 GFF2674 GFF2675 - Periplasmic Murein Peptide-Binding Protein MppA, at 197,615 to 199,228 GFF2675 Position (kb) 196 197 198Strain fitness (log2 ratio) -2 -1 0 1at 195.737 kb on + strand, within GFF2673at 195.770 kb on - strand, within GFF2673at 195.785 kb on + strand, within GFF2673at 195.956 kb on + strand, within GFF2673at 196.069 kb on - strand, within GFF2673at 196.072 kb on - strand, within GFF2673at 196.189 kb on - strand, within GFF2673at 196.274 kb on + strand, within GFF2673at 196.277 kb on + strand, within GFF2673at 196.360 kb on - strand, within GFF2673at 196.549 kb on + strandat 196.560 kb on + strandat 196.560 kb on + strandat 196.560 kb on + strandat 196.874 kb on - strand, within GFF2674at 197.086 kb on - strand, within GFF2674at 197.090 kb on - strand, within GFF2674at 197.329 kb on + strand, within GFF2674at 197.341 kb on - strand, within GFF2674at 197.432 kb on - strandat 197.632 kb on - strandat 197.911 kb on - strand, within GFF2675at 198.286 kb on + strand, within GFF2675

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Per-strain Table

Position Strand Gene LocusTag Fraction Br60_phage 15 MOI
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195,737 + GFF2673 0.19 +0.5
195,770 - GFF2673 0.23 -0.7
195,785 + GFF2673 0.24 -0.2
195,956 + GFF2673 0.43 -1.5
196,069 - GFF2673 0.56 +0.0
196,072 - GFF2673 0.56 +0.0
196,189 - GFF2673 0.69 +0.5
196,274 + GFF2673 0.78 +0.1
196,277 + GFF2673 0.79 -0.4
196,360 - GFF2673 0.88 -0.2
196,549 + -0.2
196,560 + -0.2
196,560 + +0.2
196,560 + +1.0
196,874 - GFF2674 0.31 -0.5
197,086 - GFF2674 0.53 -2.4
197,090 - GFF2674 0.54 -0.4
197,329 + GFF2674 0.80 +0.4
197,341 - GFF2674 0.81 -1.0
197,432 - -0.8
197,632 - -0.6
197,911 - GFF2675 0.18 +0.0
198,286 + GFF2675 0.42 +0.5

Or see this region's nucleotide sequence