Experiment: Br60_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2527 and GFF2528 are separated by 45 nucleotides GFF2528 and GFF2529 are separated by 58 nucleotides GFF2529 and GFF2530 overlap by 26 nucleotides
GFF2527 - Choloylglycine hydrolase (EC 3.5.1.24), at 40,950 to 42,041
GFF2527
GFF2528 - Hexuronate utilization operon transcriptional repressor ExuR, at 42,087 to 42,878
GFF2528
GFF2529 - L-galactonate dehydrogenase (EC 1.1.1.-), at 42,937 to 43,962
GFF2529
GFF2530 - putative transport protein, at 43,937 to 45,223
GFF2530
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1 at 41.969 kb on + strand at 42.215 kb on - strand, within GFF2528 at 42.282 kb on - strand, within GFF2528 at 42.686 kb on + strand, within GFF2528 at 42.707 kb on + strand, within GFF2528 at 42.717 kb on + strand, within GFF2528 at 42.762 kb on - strand, within GFF2528 at 42.954 kb on + strand at 43.071 kb on + strand, within GFF2529 at 43.133 kb on + strand, within GFF2529 at 43.134 kb on - strand, within GFF2529 at 43.255 kb on + strand, within GFF2529 at 43.334 kb on + strand, within GFF2529 at 43.334 kb on + strand, within GFF2529 at 43.358 kb on + strand, within GFF2529 at 43.467 kb on - strand, within GFF2529 at 43.467 kb on - strand, within GFF2529 at 44.047 kb on - strand at 44.148 kb on - strand, within GFF2530 at 44.503 kb on - strand, within GFF2530 at 44.557 kb on - strand, within GFF2530 at 44.677 kb on + strand, within GFF2530 at 44.693 kb on + strand, within GFF2530
Per-strain Table
Position Strand Gene LocusTag Fraction Br60_phage 15 MOI remove 41,969 + +1.2 42,215 - GFF2528 0.16 +0.5 42,282 - GFF2528 0.25 +1.0 42,686 + GFF2528 0.76 +0.2 42,707 + GFF2528 0.78 -0.5 42,717 + GFF2528 0.80 -0.0 42,762 - GFF2528 0.85 -0.6 42,954 + +0.4 43,071 + GFF2529 0.13 -0.4 43,133 + GFF2529 0.19 -0.2 43,134 - GFF2529 0.19 -2.3 43,255 + GFF2529 0.31 -1.0 43,334 + GFF2529 0.39 -0.6 43,334 + GFF2529 0.39 -0.8 43,358 + GFF2529 0.41 -0.8 43,467 - GFF2529 0.52 -1.9 43,467 - GFF2529 0.52 +1.1 44,047 - -0.0 44,148 - GFF2530 0.16 -0.5 44,503 - GFF2530 0.44 +0.3 44,557 - GFF2530 0.48 -0.5 44,677 + GFF2530 0.57 +1.1 44,693 + GFF2530 0.59 -1.6
Or see this region's nucleotide sequence